Pairwise Alignments

Query, 593 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase (DmdC) from Variovorax sp. SCN45

Subject, 596 a.a., acyl-CoA dehydrogenase family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  448 bits (1152), Expect = e-130
 Identities = 265/582 (45%), Positives = 343/582 (58%), Gaps = 15/582 (2%)

Query: 3   VYIAPLREMLFAMKEVGGLDAICAQPDHEETTPDLVEAILQEAANYAAGVLDPLNRPGDV 62
           VY APLR+  F + E+  +    A    +E  P+LV+AILQ  A+++  V+ PLN  GDV
Sbjct: 3   VYQAPLRDYQFILDEMLHIYQQDALKGFDEIDPELVDAILQGMADFSTEVMLPLNSIGDV 62

Query: 63  QGARWHDGRVTPADGFREAWASFCENGWNGMPAATEWGGQGLPTLVSTAVLEMWKSSNLA 122
           QG +  +G V   +GF +A+  F +NGW  +     +GGQGLP +V   V EM  S+N+A
Sbjct: 63  QGCKLVEGNVVTPEGFADAYQQFVDNGWPTLTCDPAFGGQGLPEVVGIFVTEMQTSTNMA 122

Query: 123 FSLCQMLTLGAVEAIAHHGSDALQRRFLAPMVEGRWTGTMNLTEPQAGSDLAALRSRAVH 182
           F++   LT GA  AI  HGS+AL++++L  +V G WTGTMNLTE  AG+DLA LR++AV 
Sbjct: 123 FAMYPGLTHGAYSAIHAHGSEALKQKYLPKLVSGEWTGTMNLTESHAGTDLALLRTKAVP 182

Query: 183 EGDHYH-VSGNKIFITWGEHDMAENIVHLVLARLPDAPPGVKGISLFLCPKYLVNDDGTL 241
             D Y  ++G KIFI+ G+H   +NIVHLVLARLPDAP GVKGISLF  PK LVN DG+L
Sbjct: 183 AADGYFAITGEKIFISSGDHPFTDNIVHLVLARLPDAPEGVKGISLFAVPKVLVNSDGSL 242

Query: 242 GERNDLACTSIEHKMGIHGSPTASMSFGDSGGAIGYLVGEPHQGLACMFTMMNHARLNVG 301
           G+ N L  + +EHKMGIHG+ T  M F    GA+G LVGEPHQGL  MFTMMN ARL VG
Sbjct: 243 GQANSLYASGLEHKMGIHGNSTCVMVF---DGALGELVGEPHQGLRAMFTMMNQARLGVG 299

Query: 302 LEGVGISERAYQRARAYALERVQGKPLISGSTA-------IAGHPDVRRMLMDMKARTEA 354
           ++G+G+SE AYQ A AYA +R+Q +  ISG+ A       I  H DVRRML+  KA  E 
Sbjct: 300 MQGLGVSEIAYQNALAYAKDRLQSR-AISGAKAPEKAADPILVHGDVRRMLLSQKAFNEG 358

Query: 355 MRALAYFCAGQMDRAAGHADAQERAQAQALVGLLIPVVKGWCTDSAQGITSDGVQVHGGM 414
            RAL    A  +D A  H+D  +   A  L  L  PVVKG+ T+       D  QV GG 
Sbjct: 359 ARALVGQQALWLDEAERHSDPAKAKAASQLAALFTPVVKGFITNRGFNACVDAQQVFGGH 418

Query: 415 GYVEETGASQHMRDARITTIYEGTTGIQANDLIGRKLAREGGRTLKALLGRIDGDARRLV 474
           GY+ E G  Q +RD+RI  IYEGT GIQA DL+GRKL  + G  ++     +    +   
Sbjct: 419 GYIHEWGMEQFVRDSRIALIYEGTNGIQALDLVGRKLLSDRGAAMQQWSTLVTEFIQS-- 476

Query: 475 ESPDAVLAQIGRALAAAAQALDEAVDWLLAH-DGQPAQCAAGAVPFLRLAGTVIGGWLSA 533
           +  DA +      L   A  L +A  +L  H    P    A ++ +L L G     W+ A
Sbjct: 477 QGKDAQMQPYVSGLMDCATDLQKASGYLATHAASNPDIIGAASMAYLELFGITALAWMWA 536

Query: 534 RMAEAATAQLAAGAGDAGFLGTKRATASHYAAHVLVQAPMLR 575
           RMA  A   L  G  + GF   K  TA  Y A+  VQ+  LR
Sbjct: 537 RMANIALTALDNGTEEVGFYQAKLKTADFYMAYWAVQSRSLR 578