Pairwise Alignments

Query, 333 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 336 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 76.3 bits (186), Expect = 1e-18
 Identities = 70/266 (26%), Positives = 118/266 (44%), Gaps = 22/266 (8%)

Query: 7   SLLAAAALATFAIAPAQAQGDKPKDKVTLMLNWYLYSEHAPFFLGKEKGFYADEGIDLDI 66
           SL     LA     PA A      DK+TL L W   ++ A +++ + KGFY DEG+D+ I
Sbjct: 6   SLAVGLTLAALGAGPASAL-----DKLTLQLKWVTQAQFAGYYVAEAKGFYKDEGLDVTI 60

Query: 67  QEGRGSAVTAQAVAAKSATFGYIDVTTMIKAAAKGAPLKSTGVLFQVSPMSVMGFSEKNI 126
           + G      +Q +A   A      + + +    KG PL +   +FQ S M +    +  I
Sbjct: 61  RSGGPDINPSQVIAGGGADVVLDWMPSALATREKGVPLVNIAQIFQKSGMMLTCRKDAGI 120

Query: 127 KTPKDIIGKTVAVTPGDS----MSQMWPLFLKVNDIKPDQVKIVSGDGQTKLNAVTNGQA 182
             P+D  G+T+ V  G +     + M  L    +   PD   +  G     ++ +   QA
Sbjct: 121 TKPEDFKGRTLGVWYGGNEHPFFAWMSKLGYSTSGAHPDVTILKQG---FNVDPILQNQA 177

Query: 183 DLLLGYVMDQAIKLQDATGKPVTPI---RFADSGVNQISSGI-ITNKNLLTENP---DLV 235
             +     ++  ++ D  G PV  +   ++ D GV  +  G  +  K+L  E+P   D +
Sbjct: 178 PCISTTTYNEYWQVVDG-GIPVDDLLNFKYEDQGVATLEDGFWVLAKDL--EDPAKVDKL 234

Query: 236 KRFMRASTKAAEAAEKSPEAAVDAML 261
            R +RA+ K    A ++ E +V  +L
Sbjct: 235 ARLVRATMKGWRYALENQEDSVGIVL 260