Pairwise Alignments

Query, 333 a.a., Hydroxymethylpyrimidine ABC transporter, substrate-binding component from Variovorax sp. SCN45

Subject, 348 a.a., ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component from Dechlorosoma suillum PS

 Score = 63.9 bits (154), Expect = 6e-15
 Identities = 73/266 (27%), Positives = 122/266 (45%), Gaps = 18/266 (6%)

Query: 1   MKKLLPSLLAAAALATFAIAPAQAQGDKPKDKVTLMLNWYLYSEHAPFFLGKEKGFYADE 60
           +K+L   LLAA A+A  A A AQA+        TL +     + HA +F+ +E+GF+  E
Sbjct: 10  LKRLPQRLLAALAVAA-AAAGAQAE--------TLKVGHLPVTGHAKYFVAQEQGFFKKE 60

Query: 61  GIDLDIQEGRGSAVTAQAVAAKSATFGYIDVTTMIKAAAKGAPLKST-GVLFQVSPMSVM 119
           G+++++ E + SA    AV A     G    T  +   +KG+ +K   G++ Q + + V 
Sbjct: 61  GLEVELVEFQNSADGINAVIAGKLDVGTFGTTAPLLFYSKGSDIKIIGGIMGQDAALVVK 120

Query: 120 GFSEKNIKTPKDIIGK---TVAVTPGDSMSQMWPLFLKVNDIKPDQVKIVSGDGQTKLNA 176
                 I++  D+ GK   TV +  GD++ +      K+N  K D       +    + A
Sbjct: 121 PELAGTIRSLADLKGKKVATVRLASGDAVLRGALKDAKIN-WKSDLQIFELKNPPAVIEA 179

Query: 177 VTNGQADLLLGYVMDQAIKLQDATGKPVTPIRFADSGVNQISSGIITNKNLLTENPDLVK 236
           V +GQ D   G V        +  G  V  +R  D         +I + N L +   L +
Sbjct: 180 VKSGQVD--AGLVWGPHDLRAEQQGLKVV-VRSGDLSPGHPCCRVIVSGNKLKDAATL-E 235

Query: 237 RFMRASTKAAEAAEKSPEAAVDAMLK 262
           RF+RA  +A + A +  +  +DA+ K
Sbjct: 236 RFLRAVLQAEKYAAEHRKETIDAIAK 261