Pairwise Alignments

Query, 291 a.a., Broad-specificity amino acid ABC transporter, permease protein 1 from Variovorax sp. SCN45

Subject, 613 a.a., inner-membrane translocator (NCBI) from Rhodospirillum rubrum S1H

 Score =  188 bits (477), Expect = 3e-52
 Identities = 101/287 (35%), Positives = 157/287 (54%)

Query: 3   ISLPGLLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAVLTWMAMEYFG 62
           +S+  L+ Q L GL + S   +++ GL++IFG+  V+NFAHG LFM+GA L +   E  G
Sbjct: 1   MSVDFLIVQFLGGLASASSLFLVAAGLSIIFGVTRVVNFAHGTLFMIGAYLAYTLAETLG 60

Query: 63  INYWVMLIAAPIVIGIFGVLIERLLLRWIYKLDHLYGLLLTLGLTLLIEGVFRSVYGVSG 122
           + +W  L+ AP+ +G  G LIE  LLR IY+   L+ L+ T  L L+   V   ++G   
Sbjct: 61  LGFWPALLLAPLAVGGLGALIEIGLLRRIYRAPELFQLVATFALVLIASDVVPMIWGPED 120

Query: 123 LPYDAPDALSSATNLGFMVLPNYRAWVVVASLVICFATWYVIEKTRLGAYLRAGTENPRL 182
           L       L  A ++    +P Y  +++    ++  A W V  +TR G  +RA TE+  +
Sbjct: 121 LLGPRAPGLGGAVSVMGRAVPEYDLFLIALGPLVLGALWLVFTRTRWGLLVRAATEDREM 180

Query: 183 VEAFGVNVPLMITLTYAFGCALAAFAGVLAAPVMQVSPLMGQNLIIVVFAVVVIGGMGSI 242
           V A G +   + T  +A G  LA   G LA P   +   M   +I+  F VVV+GGMGS+
Sbjct: 181 VAALGTDQRWLFTGVFALGALLAGLGGALALPREAIGHGMDAGVIVQAFVVVVVGGMGSV 240

Query: 243 MGAILTGLGLGVIEGFTKVFYPEASSTVVFVIMVIVLLIRPAGLFGK 289
            GA L  + LG++  F   F+P+ +   + ++M  VL++RP GL G+
Sbjct: 241 PGAYLAAVLLGLVNAFGVAFFPQGTLVTMGLVMGAVLIVRPRGLLGR 287



 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 77/281 (27%), Positives = 129/281 (45%), Gaps = 37/281 (13%)

Query: 23  AILSLGLAVIFGLLNVINFAHGALFMLGAVLTWMAMEYFGINYWVMLIAAPIVIGIFGVL 82
           A+ +  L ++ G   +++F HGA F LGA  T +A+   G++  + L  AP+  G+ G+L
Sbjct: 343 ALSASALQLLMGTGGMVSFGHGAFFGLGAYGTAVAVVQGGLSLPIALACAPLAGGLGGLL 402

Query: 83  IERLLLRWIYKLDHLYGLLLTLGLTLLIEGVFRSVYGVSGLPYDAPDALSSATNLGFMVL 142
           +  L+ R    L  +Y  +LTL    +I  +     GV+G      + L       +   
Sbjct: 403 VGWLISR----LSGVYLAMLTLAFAEIIHALAIQAVGVTG----GDNGLIGVWPPPWAGD 454

Query: 143 PNYRAWVVVASLVICFATWYVIEKTRLGAY---LRAGTENPRLVEAFGVNVPLMITLTYA 199
           P   AW+V+A   IC    + +    LG +   LRA  +     EA G+    +  LT+A
Sbjct: 455 PAVFAWLVMA---ICLPALFGLRALALGEFGRRLRALRDARSRAEASGIAAARLHALTFA 511

Query: 200 FGCALAAFAGVLAA-------PVMQVSPLMGQNLIIVVFAVVVIGGM----GSIMGAILT 248
              A A  AG L A       P +   P     L+     +V++GG+    G ++GA L 
Sbjct: 512 IVGAGAGLAGGLFAFLKGSVFPAITAIPTSVDALV-----MVLLGGLHALAGPLVGAFLY 566

Query: 249 GLGL-GVIEGFTKVFYPEASSTVVFVIMVIVLLIRPAGLFG 288
            LGL  V+   T ++       VV ++++ ++L+ P G+ G
Sbjct: 567 -LGLESVVAARTDLW-----QLVVGLVVLGLVLVFPQGVAG 601