Pairwise Alignments

Query, 291 a.a., Broad-specificity amino acid ABC transporter, permease protein 1 from Variovorax sp. SCN45

Subject, 306 a.a., putative branched-chain amino acid transport system, permease component from Phaeobacter inhibens DSM 17395

 Score =  176 bits (447), Expect = 4e-49
 Identities = 102/304 (33%), Positives = 171/304 (56%), Gaps = 19/304 (6%)

Query: 3   ISLPGLLSQLLLGLVNGSFYAILSLGLAVIFGLLNVINFAHGALFMLGAVLTWMAMEYFG 62
           +SL  +L Q+L GL  G    +++ GL ++FG++ +IN AHGAL+M+GA    +   + G
Sbjct: 1   MSLILILEQILNGLQFGVMLFLMAAGLTLVFGVMGLINLAHGALYMVGAFAAAVVAAWTG 60

Query: 63  INYWVMLIAAPIVIGIFGVLIERLLLRWIYKLDHLYGLLLTLGLTLLIEGVFRSVYGVSG 122
            ++ + L+A+       G L+E L++R +Y  DHL  +L T  L L+     R V+G   
Sbjct: 61  -SFVLALMASLAAAAAAGALVEFLVIRKLYDRDHLDQVLATFALILIFSEGTRWVFGSFP 119

Query: 123 LPYDAPDALSSATNL-GFMVLPNYRAWVVVASLVICFATWYVIEKTRLGAYLRAGTENPR 181
           L  D P  LS   +L G +  P YR  ++   LV+    +++I +TR+G  +RAG  +  
Sbjct: 120 LFLDVPSYLSGPISLPGGIEYPLYRLTIIAIGLVVAAGLFWLIARTRIGIQIRAGESDRE 179

Query: 182 LVEAFGVNVPLMITLTYAFGCALAAFAGVLAAPVMQVSPLMGQNLIIVVFAVVVIGGMGS 241
           ++ A GV++  + TL +A G ALA  AG L   +  V   MG+ ++I+ F V+VIGG+GS
Sbjct: 180 MIAALGVDISKLYTLVFALGAALAGLAGALVGAIQSVQVGMGEPVLILAFVVIVIGGIGS 239

Query: 242 IMGAILTGLGLGVIEGFTKVFYPE-----------------ASSTVVFVIMVIVLLIRPA 284
           I GA++  L +G+ +    VF P+                  +S +++++M ++LL+RP+
Sbjct: 240 IKGAMVGALLVGLTDTLGGVFLPQMFALFMEPASATSVGASLASMLIYILMAVILLVRPS 299

Query: 285 GLFG 288
           GL+G
Sbjct: 300 GLYG 303