Pairwise Alignments

Query, 440 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Variovorax sp. SCN45

Subject, 406 a.a., HlyD family secretion protein from Vibrio cholerae E7946 ATCC 55056

 Score =  319 bits (817), Expect = 1e-91
 Identities = 172/385 (44%), Positives = 248/385 (64%), Gaps = 22/385 (5%)

Query: 27  RRRALTALAAVVIVAGGGWGLYEWLVASHYEDTDNAYVSGNVIQITPQIGGTVMSINADD 86
           R++    LAA ++VAGG + LY   + S Y  TDNAY +  + ++TP +GG +  +N  D
Sbjct: 30  RKKGFLGLAAAIVVAGGSYALYWHFIGSRYISTDNAYAAAEIAEVTPAVGGIIAQVNVVD 89

Query: 87  TDFVKAGQPLVQLDPADAKVALEQAEAALAQAVRQVRTLYANNGSLAAQVTLRQSD---- 142
           T++VK G  LVQLD  DA++AL QAEA LA A R+VR+  AN+  L+A V  ++++    
Sbjct: 90  TEYVKQGDVLVQLDDTDARLALLQAEADLALAKRRVRSYLANDEGLSAMVEAQEANEQRV 149

Query: 143 ---IVKAQSDIAKAQDDLQRRRALSGNGAVSKEELNHAETALDTAKSQLAAAQAGVIAAK 199
              +  AQ+D  +A+ DL RR  L  +G+VS EEL +A+T    A++ L AA+A +  A+
Sbjct: 150 KAQLKAAQADFERAKIDLSRREDLVRSGSVSGEELTNAKTGFAQAQANLNAAKAAMAQAQ 209

Query: 200 EALVS-------NQSLTEGTSVAQHPSVLAAAAKVREAYLATQRVAMPAPVDGYVAKRTV 252
              +S       N +LT+ T+V  +P VL A A+  +A +  +R  + AP+ G VAKR V
Sbjct: 210 ATKLSTIGSQKANAALTDNTTVDSNPEVLLAKARYEQAKIDLERTVIRAPISGIVAKRQV 269

Query: 253 QLGQRVAAGTPMMSIVPLNQLWVDANFKEVQLRNIRIDQPVKLTADVYGKKVEYTGKVAG 312
           Q+G+RV  G P+M++VP + ++VDANFKEV+LR++++ QPV LTAD+YG  V Y G VAG
Sbjct: 270 QVGRRVQVGMPLMTVVPTDHIYVDANFKEVELRDVKVGQPVTLTADLYGDDVTYHGVVAG 329

Query: 313 LGVGTGSAFALLPAQNATGNWIKVVQRVPVRIALDPEQLKANPLRIGLSMDAEVDISSKS 372
              GTGSAF+++PAQNATGNWIKVVQR+P+RI LDP+ L+A PL++GLSM A +D     
Sbjct: 330 FSGGTGSAFSMIPAQNATGNWIKVVQRLPIRIELDPKDLQAYPLQVGLSMVATID----- 384

Query: 373 GKMLADAPRPAALVQTQVYSQLDRG 397
               A    P  LVQ +     ++G
Sbjct: 385 ---TAGTTDPQTLVQYRAAKVSEQG 406