Pairwise Alignments

Query, 440 a.a., Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA from Variovorax sp. SCN45

Subject, 365 a.a., protein secretion protein from Sinorhizobium meliloti 1021

 Score =  173 bits (438), Expect = 9e-48
 Identities = 119/356 (33%), Positives = 179/356 (50%), Gaps = 23/356 (6%)

Query: 24  NGKRRRALTALAAVVIVAGGGWGLYEWLVASHYEDTDNAYVSGNVIQITPQIGGTVMSIN 83
           N K+   L      V+V   GW    W   S    TDNAYV G+V  + P++ G V ++ 
Sbjct: 26  NRKKMIGLALCLGAVVVVVAGW---TWARESGAASTDNAYVRGDVTSLAPKVAGYVTAVE 82

Query: 84  ADDTDFVKAGQPLVQLDPADAKVALEQAEAALAQAVRQVRTLYANNG---SLAAQVTLRQ 140
            +D   V+AG  L ++D  D +  L QA A +  A  ++  + A      +L  Q   ++
Sbjct: 83  VEDNQAVRAGDVLFRIDDRDYRAKLAQAVANVEAAEARLTNVDAEMALQHALIRQAEAQR 142

Query: 141 SDIVKAQSDIAKAQDDLQRRRALSGNGAVSKEELNHAETALDTAKSQLAAAQAGVIAAKE 200
             +V   +  AKA D   RRR L  +  +S+  ++ ++ A   A++ + AA A V A ++
Sbjct: 143 RSVVAELNLAAKAYD---RRRELIRSETISQAHVDESDAAKSRAEANVLAASATVEAQQQ 199

Query: 201 ALVSNQSLTEGTSVAQHPSVLAAAAKVREAY----LATQRVAMPAPVDGYVAKRTVQLGQ 256
            +            AQ  + +AA A+   A     +  +   + APV G +  R V++G+
Sbjct: 200 RIA--------VLAAQREAAVAAVAQAEAARDLAGIDLESTVVRAPVGGVIGNRQVRVGR 251

Query: 257 RVAAGTPMMSIVPLNQLWVDANFKEVQLRNIRIDQPVKLTADVYGKKVEYTGKVAGLGVG 316
            VA G  ++ IVPL+ +W+ ANFKE QL +IR  Q   +T D Y K     G V     G
Sbjct: 252 LVAPGASLLDIVPLDNVWIVANFKETQLEHIRPGQRASITIDGY-KSGALEGVVDSFAPG 310

Query: 317 TGSAFALLPAQNATGNWIKVVQRVPVRIALDPEQLKANPLRIGLSMDAEVDISSKS 372
           +GSAF+LLPA NATGN+++VVQRVPV+I      L    L  GLS   E+D+   S
Sbjct: 311 SGSAFSLLPADNATGNFVRVVQRVPVKIRFAGNPLSGR-LLPGLSARVEIDLEGGS 365