Pairwise Alignments

Query, 586 a.a., Efflux ABC transporter, permease/ATP-binding protein from Variovorax sp. SCN45

Subject, 605 a.a., lipid A export permease/ATP-binding protein MsbA from Pseudomonas stutzeri RCH2

 Score =  308 bits (789), Expect = 4e-88
 Identities = 189/515 (36%), Positives = 293/515 (56%), Gaps = 14/515 (2%)

Query: 74  VAVALGLFSAARFYTVSWLGERVTADIRNAVYGRVLKQSPAFFETTQTGEVLSRLTADTT 133
           +A+  G+ S    + ++ +   +  D+R A++  +L     +F++  +G ++SR+T + T
Sbjct: 91  IALMQGIGSFLGNFFLAKVSLGLVHDLRLALFNNMLTLPNRYFDSHNSGHLISRITYNVT 150

Query: 134 LVQTVVGSSLSMGLRNAVMGVGALAVLVWTNPYVMVQVLGILVLVVLPSMWFGRRVRKLS 193
           +V      ++ + +R  +  +   A L+W N  + + +L IL ++        ++ RK S
Sbjct: 151 MVTGAATDAIKVVVREGMTVIFLFATLLWMNWKLTLVMLAILPVIGFMVSSASKKFRKQS 210

Query: 194 RASQDRVADSSAIAAEVLNAIPVVQSYTAEGREASRF-NGSTENAFRTAVRRTKARSVLV 252
           +  Q  + D + +A+E +    VV+S+  E  E +RF   S+EN  +  +R  K  +V  
Sbjct: 211 KKIQLAMGDVTHVASETIQGYRVVRSFGGEPYERNRFLTASSENTAKQ-LRMVKTNAVYT 269

Query: 253 AFI--IIATSAALLWGLYQGTQAVLRGDITAGHLGQTVVYVAILASATAVLGEVYGDLLR 310
             +  +I ++ A+L  L      +LRGD +AG L   +    +L      L EV   + +
Sbjct: 270 PSLQLVIYSAMAVLMFLV----LLLRGDASAGDLVAYITLAGLLPKPIRQLSEVSSTIQK 325

Query: 311 AAGATERLMELLHAPSAIFSPANPAVTPVPAAGSAIRFDAVTFHYPSRPGTPALRDFSLD 370
                E + E L     I    +       A    +    + F YP       LRD S  
Sbjct: 326 GVAGAESIFEQLDEEPEI----DQGTLEREAVSGHLEVRNLDFVYPGTD-KQVLRDISFT 380

Query: 371 VAPGETVALVGSSGAGKSTVFQLLLRYYDPQSGRLILDGAPLASLALSDLRTRIGLVPQD 430
           + PG+ VALVG SG+GKST+  L+ R+Y  ++G+++LDGA + S  L +LR  I LV Q 
Sbjct: 381 IEPGQMVALVGRSGSGKSTLANLIPRFYHHEAGQILLDGADVESYTLRNLRRHIALVTQQ 440

Query: 431 AVIFSTSAFENIRYGR-PEATAEEVHAAARAAFAHDFLQALPEGYDTFLGERGVRLSGGQ 489
             +F+ +   NI YG    A  +++  AAR A+A +F++ +PEGY T +GE GV LSGGQ
Sbjct: 441 VTLFNDTVANNIAYGDLAGAPLDDIRRAARDAYADEFIEQMPEGYQTLVGENGVLLSGGQ 500

Query: 490 RQRIAIARAILKNPPLLLLDEATSALDAESERMVQAALESAMEGRTTLVIAHRLATVQKA 549
           RQR+AIARA+LKN P+L+LDEATSALD ESER +Q AL+  M+GRTTLVIAHRL+T++KA
Sbjct: 501 RQRLAIARALLKNSPVLILDEATSALDTESERHIQGALDHVMQGRTTLVIAHRLSTIEKA 560

Query: 550 DRIIVLDHGGIVEQGTHAALVAQGGVYARLAALQF 584
           D+I+V++ G IVE+GTHA L+A  G YARL A QF
Sbjct: 561 DQILVMEQGRIVERGTHAELLAVNGAYARLHATQF 595