Pairwise Alignments

Query, 586 a.a., Efflux ABC transporter, permease/ATP-binding protein from Variovorax sp. SCN45

Subject, 619 a.a., ABC transporter ATP-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score =  266 bits (679), Expect = 2e-75
 Identities = 173/495 (34%), Positives = 266/495 (53%), Gaps = 21/495 (4%)

Query: 100 IRNAVYGRVLKQSPAFFETTQTGEVLSRLTADTTLVQTVVGSSLSMGLRNAVMGVGALAV 159
           IR   +  +LKQS +F++    G + +++      V+  V  SL + +   V     + +
Sbjct: 117 IRWLAHRYLLKQSVSFYQDEFAGRISTKVMQTALAVRETVMKSLDVFVYVMVYFTAIVVI 176

Query: 160 LVWTNPYVMVQVLGILVLVVLPSMWFGRRVRKLSRASQDRVADSSAIAAEVLNAIPVVQS 219
           L   +  +M+ +L  L + V   M++  +++K++    D  +  S    +    I  V+ 
Sbjct: 177 LAQADWRLMIPMLIWLAIYVTVQMYYVPKLKKVASEQADARSLMSGRIVDSYTNIMTVKL 236

Query: 220 YTAEGREASRFNGSTENAFRTAVRRTKARS------VLVAFIIIATSAALLWGLYQGTQA 273
           ++   RE        ++   T  R+ +  +       +  ++++ T AAL   L+  T A
Sbjct: 237 FSHSQRETQYAEEGMQDFLGTVHRQMRLVTGFNIWVEMANYLLVFTIAALSIYLWI-TSA 295

Query: 274 VLRGDITAGHLGQTVVYVAILASATAVLGEVYGDLLRAAGATERLMELLHAPSAIFSPAN 333
           +  G I         + + I   +  ++ EV   L    G     M +L  P  +     
Sbjct: 296 ISVGAIAVA----VSLSLRINGMSKWIMWEVSA-LFENIGTVVDGMTMLGKPITVTD--K 348

Query: 334 PAVTPVPAAGSAIRFDAVTFHYPSRPGTPALRDFSLDVAPGETVALVGSSGAGKSTVFQL 393
           P   P+      I FD V+FHY    G   +   +L++ PGE V LVG SGAGKST+  L
Sbjct: 349 PDAKPLVVKHGGITFDDVSFHYGENKGV--INHLNLNIKPGEKVGLVGRSGAGKSTLVNL 406

Query: 394 LLRYYDPQSGRLILDGAPLASLALSDLRTRIGLVPQDAVIFSTSAFENIRYGRPEATAEE 453
           LLR++D +SGR+++DG P++ +    LR++IG+V QD  +   S  +NI YG P AT E+
Sbjct: 407 LLRFHDVESGRILIDGQPISEVTQESLRSKIGMVTQDTSLLHRSIRDNILYGNPNATEEQ 466

Query: 454 VHAAARAAFAHDFLQALPE-----GYDTFLGERGVRLSGGQRQRIAIARAILKNPPLLLL 508
           +  A   A AH+F+  L +     GYD  +GERGV+LSGGQRQRIAI+R +LK+ PLL+L
Sbjct: 467 LLKATAQAHAHEFILGLTDPHGNSGYDAQVGERGVKLSGGQRQRIAISRVLLKDAPLLVL 526

Query: 509 DEATSALDAESERMVQAALESAMEGRTTLVIAHRLATVQKADRIIVLDHGGIVEQGTHAA 568
           DEATSALD+E E  +Q +L   M+G+T + IAHRL+T+   DR+IVLD G IVEQGTH  
Sbjct: 527 DEATSALDSEVEAAIQESLNELMQGKTVIAIAHRLSTIAAMDRLIVLDKGQIVEQGTHQE 586

Query: 569 LVAQGGVYARLAALQ 583
           L+AQ G+YA L A Q
Sbjct: 587 LIAQNGIYAHLWAHQ 601