Pairwise Alignments

Query, 173 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 395 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 46.2 bits (108), Expect = 7e-10
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 6/71 (8%)

Query: 72  ERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVET 131
           ++CI C +C   CP  AI +  ++     +    + ++  +CI C  C E+CP   I   
Sbjct: 158 DKCIYCTVCSQTCPWNAIFVAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI--- 214

Query: 132 HIFEYHGEKRG 142
              EY+GEK G
Sbjct: 215 ---EYNGEKLG 222



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 11/55 (20%)

Query: 74  CIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           C+AC +C   CP  AI+IE               ID  KCI+C  C ++CP ++I
Sbjct: 132 CVACGVCVPECPVDAISIEDIAV-----------IDTDKCIYCTVCSQTCPWNAI 175



 Score = 40.8 bits (94), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 66  RYENGEERCIACKLCEAVCPALAITIESEVRDDGSR-RTSRYDIDLTK-CIFCGFCEESC 123
           R+   +  C+ C+ C  +CPA  I++  +           +  I +TK C+ CG C   C
Sbjct: 83  RFPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPEC 142

Query: 124 PVDSI 128
           PVD+I
Sbjct: 143 PVDAI 147



 Score = 39.7 bits (91), Expect = 6e-08
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 64  LRRYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTK-CIFCGFCEES 122
           ++ +   EE CI C+ C   CP   I    E          +  + L + C  CG C ES
Sbjct: 189 IKSFTVNEEECIGCEKCVEACPGSMIEYNGE----------KLGVKLPEACPACGLCVES 238

Query: 123 CPVDSI 128
           CPV+ I
Sbjct: 239 CPVEVI 244



 Score = 37.4 bits (85), Expect = 3e-07
 Identities = 22/63 (34%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 72  ERCIACKLCEAVCPALAITIESE------VRDDGSRRTSRYDIDLTKCIFCGFCEESCPV 125
           E C AC LC   CP   I++E E      V D+G   +        KC +CG C   CP 
Sbjct: 227 EACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWSEE------KCAYCGPCAIKCPT 280

Query: 126 DSI 128
            +I
Sbjct: 281 GAI 283



 Score = 34.7 bits (78), Expect = 2e-06
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 71  EERCIACKLCEAVCPALAI-TIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           EE+C  C  C   CP  AI  +  +  +  S++ +    +   CI CG C   CP  ++
Sbjct: 265 EEKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGAL 323



 Score = 33.1 bits (74), Expect = 6e-06
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 16/60 (26%)

Query: 71  EERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 130
           E+ C+ C  C   CP  AI I                     CI C  C  +CP  ++VE
Sbjct: 8   EDACLVCNACAKACPTEAIEI----------------APFKTCIQCFSCATACPTGALVE 51



 Score = 32.7 bits (73), Expect = 8e-06
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 54  LSPRFRGLHALRRYENGEE--RCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLT 111
           ++P+   L + ++ E   E   CI C  C   CP  A+ +   V +   +  +R +    
Sbjct: 286 VNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKMGKMVHE--GKEYARVEFSPA 343

Query: 112 KCIFCGFCEESCP 124
            C  CG C + CP
Sbjct: 344 LCNECGECVDVCP 356



 Score = 30.0 bits (66), Expect = 5e-05
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 10/52 (19%)

Query: 74  CIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPV 125
           CI C  C   CP  A+     V  DG     +   + +KC   G C+++CPV
Sbjct: 34  CIQCFSCATACPTGAL-----VEKDG-----KLVFNGSKCDLDGACQKACPV 75