Pairwise Alignments

Query, 173 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 252 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 10/77 (12%)

Query: 64  LRRYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESC 123
           L ++E  EE CI C +CE  CP  AIT+E         + +  DI+L  C+ C  CE+ C
Sbjct: 124 LVKHELDEESCIKCGICERFCPTSAITVE---------KRNSIDINLNLCMGCTACEKVC 174

Query: 124 PVDSI-VETHIFEYHGE 139
           P  +I VE  + E   E
Sbjct: 175 PKSAIKVENEMGEITAE 191



 Score = 46.2 bits (108), Expect = 4e-10
 Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 10/57 (17%)

Query: 72  ERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           + CI C +C  +CP  AI  E     DG  +     +D   CIFCG CE++CPV +I
Sbjct: 199 DTCINCMVCSEICPVGAIVYE-----DGLMK-----LDDKMCIFCGKCEKNCPVTAI 245



 Score = 45.8 bits (107), Expect = 6e-10
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 6/58 (10%)

Query: 74  CIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTK--CIFCGFCEESCPVDSIV 129
           C+ C  CE VCP  AI +E+E+ +     T+  +I L    CI C  C E CPV +IV
Sbjct: 164 CMGCTACEKVCPKSAIKVENEMGEI----TAENEISLNNDTCINCMVCSEICPVGAIV 217



 Score = 43.1 bits (100), Expect = 4e-09
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 16/73 (21%)

Query: 72  ERCIACKLCEAVCPALAITI---ESEVRDDG-------------SRRTSRYDIDLTKCIF 115
           E+C+ C++C   CP  AI +    +++ +D                R  ++++D   CI 
Sbjct: 77  EKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCIK 136

Query: 116 CGFCEESCPVDSI 128
           CG CE  CP  +I
Sbjct: 137 CGICERFCPTSAI 149



 Score = 38.1 bits (87), Expect = 1e-07
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)

Query: 73  RCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           +CI C+LC  +CP  AI  E  V+       S  +I   KC+ C  C ++CPV +I
Sbjct: 47  KCIRCELCYEMCPVDAIK-EPSVK-------SPAEILPEKCVKCEICAKTCPVGAI 94



 Score = 32.0 bits (71), Expect = 8e-06
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 108 IDLTKCIFCGFCEESCPVDSIVETHI 133
           ++  KCI C  C E CPVD+I E  +
Sbjct: 43  VESNKCIRCELCYEMCPVDAIKEPSV 68



 Score = 27.7 bits (60), Expect = 2e-04
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 5/33 (15%)

Query: 67  YENG-----EERCIACKLCEAVCPALAITIESE 94
           YE+G     ++ CI C  CE  CP  AI I+ +
Sbjct: 218 YEDGLMKLDDKMCIFCGKCEKNCPVTAIAIKQK 250