Pairwise Alignments

Query, 173 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 161 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 45.1 bits (105), Expect = 6e-10
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 66  RYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPV 125
           + E   E CI C  C  VCP  AI+         S      DID  KC++C  C E+CPV
Sbjct: 30  KIEINPEICILCNRCLEVCPVTAIS---------SNFPEVPDID-NKCVYCNTCVETCPV 79

Query: 126 DSI 128
           D+I
Sbjct: 80  DAI 82



 Score = 42.0 bits (97), Expect = 5e-09
 Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 10/64 (15%)

Query: 65  RRYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCP 124
           ++ +   ++C+ C +C   CP  AI+   +        T  +++D  KC+ CG CEE CP
Sbjct: 105 KKLDYNRKKCVMCLVCTKNCPFEAISESDD--------TISFNMD--KCVLCGHCEEICP 154

Query: 125 VDSI 128
             +I
Sbjct: 155 AKAI 158



 Score = 41.2 bits (95), Expect = 9e-09
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 8/69 (11%)

Query: 71  EERCIACKLCEAVCPALAITI-ESEVRDDGSR-------RTSRYDIDLTKCIFCGFCEES 122
           + +C+ C  C   CP  AI I ++ VR +          ++ + D +  KC+ C  C ++
Sbjct: 64  DNKCVYCNTCVETCPVDAIKITKTRVRVENGNLIIENRLKSKKLDYNRKKCVMCLVCTKN 123

Query: 123 CPVDSIVET 131
           CP ++I E+
Sbjct: 124 CPFEAISES 132



 Score = 30.4 bits (67), Expect = 2e-05
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 72  ERCIACKLCEAVCPALAITIE 92
           ++C+ C  CE +CPA AI +E
Sbjct: 141 DKCVLCGHCEEICPAKAIKLE 161



 Score = 26.2 bits (56), Expect = 3e-04
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 98  DGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           D    +++ +I+   CI C  C E CPV +I
Sbjct: 23  DSQYISNKIEINPEICILCNRCLEVCPVTAI 53