Pairwise Alignments

Query, 173 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 393 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 47.4 bits (111), Expect = 3e-10
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 9/62 (14%)

Query: 71  EERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 130
           EE C++C  CE  CP  AI+            T  Y+ID+  C+ C  C ++CPV++ + 
Sbjct: 125 EEVCVSCGTCENACPVDAIS---------HNNTGLYEIDVNLCVSCKNCLKACPVENAIV 175

Query: 131 TH 132
           T+
Sbjct: 176 TY 177



 Score = 42.0 bits (97), Expect = 1e-08
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 72  ERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVD 126
           E+CI+C  C+  CP+ AI++  E  ++  +    +D     CI CG C ESCP +
Sbjct: 47  EKCISCSACKESCPSDAISM--EFNEEFKKEMPVFDAG--SCINCGNCVESCPTN 97



 Score = 41.6 bits (96), Expect = 2e-08
 Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 9/59 (15%)

Query: 71  EERCIACKLCEAVCPAL-AITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           EE+CI C++C   C    AI I        S+ T+   I+   C+ CG C+ +CPVD+I
Sbjct: 280 EEKCIGCRICYRSCNVPEAILI--------SKETNLPYINPEYCVRCGLCQNACPVDAI 330



 Score = 36.2 bits (82), Expect = 7e-07
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)

Query: 74  CIACKLCEAVCPALAITIESEVRDDGSRRTSR-YDIDLTKCIFCGFCEESCPVDSIV 129
           CI    C  VCP  AI I   V +  ++RT+  Y +D  KCI C  C  SC V   +
Sbjct: 245 CIKSGKCLEVCPTTAIRIG--VPEKITKRTAECYIVDEEKCIGCRICYRSCNVPEAI 299



 Score = 30.4 bits (67), Expect = 4e-05
 Identities = 11/17 (64%), Positives = 13/17 (76%)

Query: 112 KCIFCGFCEESCPVDSI 128
           KCI C  C+ESCP D+I
Sbjct: 48  KCISCSACKESCPSDAI 64



 Score = 28.9 bits (63), Expect = 1e-04
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 15/55 (27%)

Query: 74  CIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           CI C  C  VCP  +I +E               + +T CI  G C E CP  +I
Sbjct: 221 CIGCGNCVDVCPG-SIDLER--------------LKVTSCIKSGKCLEVCPTTAI 260



 Score = 28.1 bits (61), Expect = 2e-04
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 24/82 (29%)

Query: 67  YENGEERCIACKLCEAVCP-------------ALAITIESEVRDDGSRRTSRYD------ 107
           YE     C++CK C   CP             +  I I   ++ D  R  S +       
Sbjct: 151 YEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVI 210

Query: 108 -----IDLTKCIFCGFCEESCP 124
                I  + CI CG C + CP
Sbjct: 211 AEIPRIVPSLCIGCGNCVDVCP 232