Pairwise Alignments

Query, 173 a.a., NADH-ubiquinone oxidoreductase chain I (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 352 a.a., 4Fe-4S binding protein from Methanococcus maripaludis S2

 Score = 57.8 bits (138), Expect = 2e-13
 Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 48  PEEKTPLSPRFRGLHALRRYENGEERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYD 107
           P  + P  P+ +     R  E  + +C+ C+ CE VCP  AI +E EV +  S       
Sbjct: 94  PITEMPQYPKIK-----RGIELNQSKCVLCEQCELVCPQCAIDVEREVPERKSLVLGEIT 148

Query: 108 IDLTKCIFCGFCEESCPVDSI 128
           I    C+ CG C E CP D+I
Sbjct: 149 IKKDDCVLCGICAEYCPADAI 169



 Score = 43.9 bits (102), Expect = 3e-09
 Identities = 26/97 (26%), Positives = 47/97 (48%), Gaps = 13/97 (13%)

Query: 71  EERCIACKLCEAVCPALAIT-IESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIV 129
           ++ C+ C +C   CPA AI  I +++        +   IDL  C++C  CE++CP ++I 
Sbjct: 151 KDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAI- 209

Query: 130 ETHIF-----------EYHGEKRGDLYFTKDMLLAVG 155
           E   +           E +GE +G     K++ ++ G
Sbjct: 210 EAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCG 246



 Score = 41.6 bits (96), Expect = 1e-08
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)

Query: 71  EERCIACKLCEAVCPALAITI-ESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           E  C AC  C +VCP  A+   + E + D   +     ++   CI CG C  SCPVD++
Sbjct: 271 EPACNACGACISVCPCNALVFPQPEKQGD---KVPNVVVNQDVCILCGACTHSCPVDAL 326



 Score = 41.2 bits (95), Expect = 2e-08
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 9/73 (12%)

Query: 72  ERCIACKLCEAVCPALAIT-------IESEVRDDG--SRRTSRYDIDLTKCIFCGFCEES 122
           + C+ CK+CE  CP  AI        + S+++          + +ID   C+ CG+C   
Sbjct: 192 DACVYCKVCEKACPHNAIEAICYKCPLASKIKKPELYGEIKGQTNIDKELCVSCGWCANI 251

Query: 123 CPVDSIVETHIFE 135
           CP D+I     FE
Sbjct: 252 CPADAIEVEKPFE 264



 Score = 40.4 bits (93), Expect = 3e-08
 Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 8/85 (9%)

Query: 71  EERCIACKLCEAVCPALAITIESEVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 130
           +E C++C  C  +CPA AI +E     +         ID   C  CG C   CP +++V 
Sbjct: 239 KELCVSCGWCANICPADAIEVEKPFEGE-------LIIDEPACNACGACISVCPCNALVF 291

Query: 131 THIFEYHGEKRGDLYFTKDMLLAVG 155
               E  G+K  ++   +D+ +  G
Sbjct: 292 PQP-EKQGDKVPNVVVNQDVCILCG 315



 Score = 39.3 bits (90), Expect = 7e-08
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)

Query: 74  CIACKLCEAVCPALAITIES-EVRDDGSRRTSRYDIDLTKCIFCGFCEESCPVDSI 128
           C+ C +C  +CP  AI +        G     + DI   KC+ CG C  +CP D++
Sbjct: 32  CVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCVLCGMCACACPFDAV 86



 Score = 39.3 bits (90), Expect = 7e-08
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 10/92 (10%)

Query: 72  ERCIACKLCEAVCPALAITIESEVRDDGSRRTSRY-------DIDLTKCIFCGFCEESCP 124
           E+C+ C +C   CP  A+ +   + D       +Y       +++ +KC+ C  CE  CP
Sbjct: 69  EKCVLCGMCACACPFDAVKL--SINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP 126

Query: 125 VDSI-VETHIFEYHGEKRGDLYFTKDMLLAVG 155
             +I VE  + E      G++   KD  +  G
Sbjct: 127 QCAIDVEREVPERKSLVLGEITIKKDDCVLCG 158



 Score = 23.9 bits (50), Expect = 0.003
 Identities = 8/22 (36%), Positives = 13/22 (59%)

Query: 71  EERCIACKLCEAVCPALAITIE 92
           ++ CI C  C   CP  A+T++
Sbjct: 308 QDVCILCGACTHSCPVDALTVK 329