Pairwise Alignments

Query, 723 a.a., NADH-ubiquinone oxidoreductase chain G (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 1428 a.a., formate dehydrogenase, alpha subunit (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  144 bits (364), Expect = 2e-38
 Identities = 145/629 (23%), Positives = 248/629 (39%), Gaps = 95/629 (15%)

Query: 96   LDCPICDQGGECQLQDLAVGYGGSSSRYEEEKRVVFHKDVGPLISMEEMSRCIHCTRCVR 155
            L+C  C    +C+L+D A  YG  S     E    F  D        + +RCI C +CV 
Sbjct: 601  LECA-CQANTDCKLRDYATDYGVESKSLATENARYFSVDKSSPFIQFDANRCISCGKCVD 659

Query: 156  FGQEVAG------------VMELGMSHRGEHSEIET-FVGDSVDSEL--SGNMIDICPVG 200
              Q+ +G            V+   +S   E       F     DS     GN + +CP G
Sbjct: 660  VCQQQSGHCAIQFAKDSYQVLPQSISPADERRAPRVGFSASMADSHCVQCGNCVQVCPTG 719

Query: 201  ALTSKPFRYSARTWELSRRKSVSPHDSTGANLIVQV--KNNHVMRVVPLENEDVNECWIA 258
            AL     +      EL+   ++  +   G  L +++    N +  +   ++  VN+  + 
Sbjct: 720  ALVDARDKRQGDCTELTTASTICTYCGVGCRLDLKIDPSTNRIRHIEGNKDSVVNQGMLC 779

Query: 259  DRDRFSYEALNGTERLTQPMLKQGGQWQQVDWQTALEYVANGLKQIKADHGAQSIGTLVS 318
             + RF ++ ++  +RLT P++++ G+ Q   W  A++YVA  L +IK   G+ +  +L S
Sbjct: 780  VKGRFGFDFIHSDKRLTTPLIRKNGKLQPCSWPEAIDYVAKRLTEIKQKDGSNAFASLAS 839

Query: 319  PHSTLEELQLATMLTRE-LGSDNIDYRLRNAEFAAFEGVRW------LGTSIASLTQVQR 371
              +T E+  +     R  LG++NID+  R    +   G++       +   I S+     
Sbjct: 840  AKATNEDNFVLQKFVRSVLGTNNIDHCARLCHSSTVTGLQQSIGSGAMTNDILSIKDSDV 899

Query: 372  ALVVGSNLRKEHPLFAQRIRQAVRKGAALSVITSA------------------------- 406
              ++GS+    HP+ A +I+QAV    A  ++                            
Sbjct: 900  IFILGSDTTCAHPIIASKIQQAVNLYGARLIVADPKRVGIAEKAELYVAHRPGTDVMLLN 959

Query: 407  SLMAD--RNAWAIDVAQSSIVEADQWVEALAAVAAAIGETNGAAAPLAPKNAPDAAAKAI 464
            ++MA+  RN W     +  I +  + +EAL A  A    +   AA +    A + A   I
Sbjct: 960  AIMAEIIRNNWQ---DKDYIAKRTEGIEALYAELAKEDYSLEKAALITGVKAENIAR--I 1014

Query: 465  AASLLSGERKAVLLGNAAAHHAQA-------SSLLALANWIGAQTGATVGYLTEAANTVG 517
            A ++ + ++ AV        H          S+L  L   IG  +GA +  L   +N  G
Sbjct: 1015 ARTIGTAQKTAVYYAMGITQHTTGHDNVTAISNLQLLCGNIGV-SGAGINPLRGQSNVQG 1073

Query: 518  AQLVGAFPK---------------------------NGGLDAGRML--AAGSGLKAVLLL 548
            A  +GA P                              G+ A  M+   A   + A+ ++
Sbjct: 1074 ACDMGALPNYFTGYQKVTDIHARMRFESHWQTPLSGEIGVTATHMMHDIAKGKINALYVM 1133

Query: 549  NNEPVFDSAAGKAAADVIGNAQMVVTLSPFKANL-EFSDVLLPIAPFTETPGTFVNAEGR 607
               PV          + +   + +V    F     E + V+LP A F E  G F N E R
Sbjct: 1134 GENPVLSDPDQAHVLNALSQIEFLVVQDIFLTETAELAHVVLPAAAFVEKRGHFTNTERR 1193

Query: 608  LQGFHAVVKPQGETRPAWKVLRVLANLLG 636
            +Q     +   GE  P W++++ +AN +G
Sbjct: 1194 VQRLEQALASPGEALPDWQIVQAIANAMG 1222



 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 37/110 (33%), Positives = 55/110 (50%), Gaps = 12/110 (10%)

Query: 1   MIEIELDGKKVEVTEGSMVMHAADKAGTYIPHFC----YHKKLSIAA-----NCRMCLVD 51
           MIE+ +D K V       ++HAA KAG  IP  C      ++L   A     +C +CLV 
Sbjct: 1   MIELRIDNKIVSAEPSDNLLHAARKAGIAIPSLCDPTDASRQLDTQAHAEKQDCNLCLVQ 60

Query: 52  VEKAP---KPMPACATPVTQGMIVRTKSEKAIKAQQSVMEFLLINHPLDC 98
           +E +    + + AC TP   GM V T+S    K +Q+ +  +L +H  DC
Sbjct: 61  IENSDASLRCVKACETPAQTGMKVITQSAFLTKQRQAALNAILSDHFADC 110