Pairwise Alignments

Query, 417 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  106 bits (265), Expect = 1e-27
 Identities = 96/402 (23%), Positives = 176/402 (43%), Gaps = 62/402 (15%)

Query: 12  GPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPYMDRLDYVSM 71
           GP HP     LR+ L ++GE ++ A+  +G +HR  E++ E + +++ +   +R+  +  
Sbjct: 7   GPIHPILKEPLRIKLLVEGENVKGAEIDMGYVHRGIERIMEGKHYLKCIHLSERVCGICS 66

Query: 72  MSNEHAYCLAIERMMGLEVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCGAMNMLIYCF 131
             +  ++   IE M  +EVP +A+Y+RV+  E+ R+ +HL+    + L      + I+  
Sbjct: 67  YIHTQSFAECIENMCDIEVPEKAKYLRVITCELERIHSHLIAAAVYNLTIEHETLGIWML 126

Query: 132 REREDLFDLYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIEKLNENRQGS 191
             RE + DL E ++G R++  +   GGV  DL             N + ++K+++     
Sbjct: 127 NVRESIMDLLELITGNRVNMGFNVVGGVRLDL-------------NKEILDKIHKK---- 169

Query: 192 MLDFVDDFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTGPMLRGSGI- 250
               +D+F +    +++ +ET      +   R+  IG +  +  +     GP+ R SGI 
Sbjct: 170 ----IDEFEEDVKNIIEVFET----GPLIGMRSKHIGKIGYKEIMKTRAAGPVARASGIP 221

Query: 251 --EWDLRKKQPYDVYDRMQFDVPVGKTGDCYDRYLVRVEEMRQANRIIQQCSAWLRANPG 308
             +W +R    ++ Y  + F       GD Y R +VR +E+  +  +I++       + G
Sbjct: 222 ESDWRIR----HETYKALNFKPDWRNEGDNYARMMVRHDEVLTSVELIRRALEHYAESSG 277

Query: 309 PVITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSD 368
            V                 N  E+              EGE Y      +  + I +   
Sbjct: 278 IV----------------RNKAEI-----------RATEGEWYNEAHRGEVYYKIAITDG 310

Query: 369 GANKPYRLKIRAPGFPHLAALDEMSRG-HMIADAVAVIGTMD 409
           G  K  R+ IR P   +L A   M +    IADAVA   ++D
Sbjct: 311 GLIK--RIIIRTPTVMNLEAYKYMIKDCPTIADAVATYTSID 350