Pairwise Alignments

Query, 417 a.a., NADH-ubiquinone oxidoreductase chain D (EC 1.6.5.3) from Variovorax sp. SCN45

Subject, 375 a.a., nickel-dependent hydrogenase large subunit from Methanococcus maripaludis S2

 Score =  109 bits (273), Expect = 1e-28
 Identities = 103/408 (25%), Positives = 183/408 (44%), Gaps = 53/408 (12%)

Query: 12  GPQHPAAHGVLRLVLELDGEVIQRADPHIGLLHRATEKLAESRTFIQSLPYMDRLDYVSM 71
           GP H       RL L ++ E+++ A+  IG+ HR  E+L E     ++    +++    +
Sbjct: 9   GPVHSTMLEPHRLRLFIEDEIVKDAELTIGVNHRGVERLMEGLPVEKACILCEKI--CGI 66

Query: 72  MSNEHAYCLA--IERMMGLEVPIRAQYIRVMFAEITRLLNHLLWLGAHGLDCGAMNMLIY 129
            S+ H +  A  +E    +E+P RA +IR++  E+ RL +H L  G      G   M + 
Sbjct: 67  CSHIHLWSAARLVEIGCNIEIPERANHIRIIVEELERLHSHTLLFGHAFEILGHETMSMR 126

Query: 130 CFREREDLFDLYEAVSGARMHAAYFRPGGVYRDLPDAMPQYKVSKIKNAKAIEKLNENRQ 189
           CF  RE +  ++  +SG+R+H +    GG+        P+  +S+ +    ++K+++  +
Sbjct: 127 CFMLREPIMQVFFEISGSRVHYSCPIIGGI-------RPRCNISETQIPHILDKISKYEE 179

Query: 190 GSMLDFVDDFCKRFPKMVDEYETLLTDNRIWKQRTVGIGVVTPERALNLGFTGPMLRGSG 249
           G     ++ F +R          +L D  I   R   +GV+  + A      GP  RGS 
Sbjct: 180 G-----LNKFLER----------MLNDPMI-ISRVKDVGVMDRKTAAKFHAVGPTARGSN 223

Query: 250 IEWDLRKKQPYDVYDRMQFDVPVGKTGDCYDRYLVRVEEMRQANRIIQQCSAWLRANPGP 309
           ++ D+RK      YD   FD  +  +GD + R  VR  E  ++ +II+Q    L+     
Sbjct: 224 VKSDMRKWGWVPEYDPYDFDEILFDSGDVFARLAVRFYECLESVKIIRQALDALKD---- 279

Query: 310 VITDNHKVAAPARESMKANMEELIHHFKLFTEGFHVPEGEAYAAVEHPKGEFGIYLVSDG 369
             T + ++  P  E         +H FK          GE Y +       +G+    D 
Sbjct: 280 --TSDKRIYNPNYE---------LHEFKPINCYTEAQRGEQYYS-------YGL----DD 317

Query: 370 ANKPYRLKIRAPGFPHLAALDEMSRGHMIADAVAVIGTMDIVFGEIDR 417
                + KIR P   +L A++++ +G+ ++DA  +I + D  F   DR
Sbjct: 318 EGLVRQAKIRTPTATNLGAMEDIVKGYHVSDAELIIASCDPCFTCTDR 365