Pairwise Alignments

Query, 414 a.a., Nitrate ABC transporter, substrate-binding protein from Variovorax sp. SCN45

Subject, 659 a.a., nitrate transport ATP-binding subunits C and D from Synechococcus elongatus PCC 7942

 Score =  187 bits (475), Expect = 8e-52
 Identities = 119/389 (30%), Positives = 198/389 (50%), Gaps = 11/389 (2%)

Query: 30  RAAVWAQGSDKPEKEEVKIGFIPLTDCASVVMASVLGIDKKYGVKIVPSKEASWAGVRDK 89
           +AA  A      +++ V++GF+P  DCA + +A  LG+ +  G+ +      +W  + D 
Sbjct: 265 KAAAPAPAVAASQQKTVRLGFLPGNDCAPLAIAQELGLFQDLGLSVELQSFLTWEALEDS 324

Query: 90  LSNGDLDMAHVLYGLVYGMHLGLSGPRK-DMAVLMTLNNNGQAITLSKKLSDKGAVDAAS 148
           +  G L+ A ++      M +GL G R   +A  +T++ NG AI LS++  + G      
Sbjct: 325 IRLGQLEGALMMAAQPLAMTMGLGGHRPFAIATPLTVSRNGGAIALSRRYLNAGVRSLED 384

Query: 149 LAKLIASEKREYTFAQTFPTGTHAMWLYYWLASAGIDPFKDVKNITVPPPQMVANMRVGN 208
           L + +A+  +    A   P    A+ L YWLASAG++P +DV+ + + P +MV  ++ G+
Sbjct: 385 LCQFLAATPQRLRLAIPDPIAMPALLLRYWLASAGLNPEQDVELVGMSPYEMVEALKAGD 444

Query: 209 MDGYCVGEPWGQRAIMDGIGITAITTQDIWKDHPEKVLGCTAEFTKKYPNTARAVTAAIL 268
           +DG+  GE     A+  G      T  DIW  HPEKVLG    + +  P TA A+ +A+L
Sbjct: 445 IDGFAAGEMRIALAVQAGAAYVLATDLDIWAGHPEKVLGLPEAWLQVNPETAIALCSALL 504

Query: 269 EAGKWIDAGLQNKNKMAETIADKSYVNTSVDAINQRILGRYTNGLGKSWDDPNHMKFYNG 328
           +AG+  D   Q ++++ E +    Y+ ++   + QR    +  GLG   D+P  +  +N 
Sbjct: 505 KAGELCDDPRQ-RDRIVEVLQQPQYLGSAAGTVLQRY---FDFGLG---DEPTQILRFNQ 557

Query: 329 GAV---NFPYLSDGMWFLTQHKRWGLLKEHPDYLKVATEINRIDIYKQAAAATQTPVPKD 385
             V   N+P   +G W LTQ  RWGL     +  ++   + R DIY+ A AA   P+   
Sbjct: 558 FHVDQANYPNPLEGTWLLTQLCRWGLTPLPKNRQELLDRVYRRDIYEAAIAAVGFPLITP 617

Query: 386 PMRTSKLFDGSVWDGKDPKKYADSFKLHA 414
             R  +LFD   +D   P +Y + F++ A
Sbjct: 618 SQRGFELFDAVPFDPDSPLRYLEQFEIKA 646