Pairwise Alignments

Query, 422 a.a., ABC transporter, substrate-binding protein (cluster 1, maltose/g3p/polyamine/iron) from Variovorax sp. SCN45

Subject, 343 a.a., spermidine/putrescine ABC transporter substrate-binding protein from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 72/338 (21%), Positives = 128/338 (37%), Gaps = 47/338 (13%)

Query: 12  KRRTLLQGTAGILATGIAPFVHAQEKVVLRYLGTAVNQDKAIAEKFKADTGIEIQYVAVT 71
           K  TLL G+A  L+          +++V    G  +N    I E+F  +TGI++ Y    
Sbjct: 3   KLATLLAGSACALSLLSGTAAAEDKELVFMNWGPYINS--GILEQFTKETGIKVIYSTYE 60

Query: 72  TDDVTKRAVTAPNS-FDLIDTEFFSLKKIVPTGNLKGIDTRRVKNADKITSLFTKGEVAG 130
           +++     +   N  +DL+    + + K+   G L+ ID  ++ N   + S         
Sbjct: 61  SNETLYAKLKTHNQGYDLVVPSTYFVAKMRDEGMLQKIDKSKLSNFKNLDSN-------- 112

Query: 131 KKVGDQGTAPVKVIYLEGEKSKAFAKSATQYMSLIPTTYNADTLGIRPDLIKRPIGSWAE 190
                         YL+         S    +++     N D              SW +
Sbjct: 113 --------------YLDKPYDPNNDYSIPHVVAITGLAVNTDMYD------PNDFQSWGD 152

Query: 191 LLNPEFKGKTAILNIPSIGIMDAAMVVEAKGIHKYADKGNMTK-AEIDLTIKTLIEAKKA 249
           L  PE KG+        + +MD    V    + K    GN T   +ID   +   E +K 
Sbjct: 153 LWKPELKGQ--------LMLMDDTREVFHIALRKLGYSGNSTDDKQID---EAYAELQKL 201

Query: 250 GQFRALWKDFNESVNLMASGEVVIQSMWSPAVTAVRSKGIDCTFQPLKEGYRAWASGFGL 309
                ++   N +   + SGEV +  +W+ +  A + +G+       KEG   W   F +
Sbjct: 202 MPNVLVFNSDNPAAPYL-SGEVGLGMLWNGSAAAAQKEGLPIKLVFPKEGGIGWVDNFAI 260

Query: 310 PATLSGKKLDGAYEFINWFLDGWAGAYLNRQ-GYYSAV 346
            +    K +D A++ I++ L       ++R  GY + V
Sbjct: 261 SS--GAKNVDAAHKMIDFLLRPEIAEQISRDTGYLTGV 296