Pairwise Alignments

Query, 265 a.a., ABC transporter, permease protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 304 a.a., ABC transporter permease from Sinorhizobium meliloti 1021

 Score =  135 bits (340), Expect = 1e-36
 Identities = 85/234 (36%), Positives = 129/234 (55%), Gaps = 17/234 (7%)

Query: 40  ASGTAYDWDFGVLWSYRRLLLIGLAYTLVFTVVCVVLGLAIGLITGLGRLSRNPWISAPI 99
           AS   + WD    + +   +L GL+ T+  TVV +V+G+ +G I  +  ++ N  IS   
Sbjct: 47  ASNPNFGWDVVADYLFDSRILWGLSLTVWLTVVTMVIGVVLGTIFAIMAMADNVVISTVA 106

Query: 100 RAYIEVFRCTPVLVQLVWFYYA-----------------LPVLTGLEISAVAAATLCLSL 142
            AYI  FR TPVLVQL+++Y                   + V T   IS V AA L L L
Sbjct: 107 NAYIWFFRGTPVLVQLIFWYNLGALFPQLSVGVPFTSLWVSVPTNTLISPVTAAVLGLGL 166

Query: 143 YGGAFYSEIVRGGIISIDNGQVEAARALGMTRMQLMRRIVLPQAFKRMVPPLMSQSIMQL 202
             GA+ SEI+R G++S+D GQ +AA++LGMT  + + RI+LPQA   ++PP  +Q+I  L
Sbjct: 167 NEGAYMSEIIRSGLMSVDPGQRQAAKSLGMTNGKTLWRILLPQAMPVIIPPTGNQTIGML 226

Query: 203 KNTSLLSVLAVPDLLYQGQVIAHETYRPLELYTFIAVAYFAVLLPVTIWAKRME 256
           K +SL+SV+++ DLLY  Q I    ++ + L     + Y A    ++    R+E
Sbjct: 227 KTSSLVSVISLADLLYSAQTIYSRNFQTIPLLIVACIWYLAATTILSAVQVRIE 280