Pairwise Alignments

Query, 277 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

Subject, 264 a.a., ABC transporter substrate-binding protein from Methanococcus maripaludis S2

 Score = 60.1 bits (144), Expect = 5e-14
 Identities = 53/242 (21%), Positives = 104/242 (42%), Gaps = 7/242 (2%)

Query: 12  VAAVAACTLGPAFAQDQESSLARVQRTHVLRVGAIAGAIPYFAKDPGTGKWEGFGPDFGE 71
           V A + C         +++S   V+ + VL+VG  A   P+ +++  TG+ EGF  D   
Sbjct: 16  VLAFSGCVSNSEAQSTEDNSWKNVEESGVLKVGLCAAWPPFESRNEKTGEIEGFDVDLAN 75

Query: 72  SLAKSLGAKVEYVETTWGNAVLDLQSNKIDAMFG-LAPSPQRAAMVNFADTLFENTYTVV 130
           +L + LG +VE V+  W   +  L     D +   ++        V  ++  +E    +V
Sbjct: 76  ALGEELGIEVEIVDAEWQALLGGLSKGDYDTLITCMSKKEASVENVEMSEVYYELNDVIV 135

Query: 131 CKKGVPQKSWEQLNTPETKIV-VDIGSSHDQLAQRVLPKADVTRLENSGAATMSLQAGRA 189
            +          ++    KIV V +GS  +Q    +    ++ R   +  A + LQ  R+
Sbjct: 136 VRN--DNNEINNVSDLSGKIVGVQLGSGSEQAVDALSGIKEIKRYNYNPEAMIDLQNNRS 193

Query: 190 DCQVLVILLAEPLLAKRPGLGTMYIPQPVYTAPVSIGLRKDSDPGLQKAVNAWLAQERSK 249
           D  V+        ++K P L    +  P+ +A + + ++K+    L   +N  L++ +  
Sbjct: 194 DAVVVGYTYVLSEISKYPDL--KVLDTPIASAEI-VMVQKEGAKELTVKLNEALSKIKEN 250

Query: 250 GE 251
           G+
Sbjct: 251 GK 252