Pairwise Alignments

Query, 462 a.a., Cobalt/zinc/cadmium efflux RND transporter, membrane fusion protein CzcB from Variovorax sp. SCN45

Subject, 529 a.a., RND family efflux transporter MFP subunit (RefSeq) from Shewanella loihica PV-4

 Score = 92.4 bits (228), Expect = 3e-23
 Identities = 82/359 (22%), Positives = 151/359 (42%), Gaps = 48/359 (13%)

Query: 111 KKEHAGHEEEEEKIAFTDAQIKAADMTIENAGPARIKSSLQLPGEIKFNEDRTAHVVPRV 170
           +K     + ++ +I  + +  +A  + +  A    +   +Q  G+I ++E +  HV  RV
Sbjct: 186 EKVEMSADTQQIEIDVSGSMQQALALKVAKAEKDTLWKFVQTVGQIGYDESQINHVHARV 245

Query: 171 AGVVDSVS-ANLGQEVKRGQVLAVISSPALSEQRSELQSAQRRLALARTTYVREKTLWEE 229
            G ++ ++  ++G ++ +GQ+L  I SP L                              
Sbjct: 246 NGWIEKLAITSVGDKISKGQLLYEIYSPDL------------------------------ 275

Query: 230 KISPQQDYLQAQQVMQEA------QIAVANANQKLLALGATPSS----SALGRYELRAPF 279
            I+ Q DYL A   +Q +      Q  V  A  +L  LG   +     +   + + R PF
Sbjct: 276 -INAQDDYLLALSSLQSSKDSRNYQDLVRKAGLRLELLGMNQAQIKQLAKSKQTQYRVPF 334

Query: 280 ----DGMVVEKHISLGESVGEAVNVFTISDLSTVWAEISVAANNLNLVRIGEPVSIRSSA 335
               DG+V    +  G  +  A  V ++ DLS VW    V  N  + + IG+P  +   A
Sbjct: 335 YAKADGIVKALSVRDGMYIQPATEVMSVVDLSKVWVIADVFENEQSWLAIGQPTEVSVPA 394

Query: 336 LG-QTATGKVSYVGSLIGAQTRTATARVTLTNPQRVWRPGLFVNVELVASEVDAPVTVST 394
           +  +   GK+ Y+   +   TR+   R+ L N +   RP     +E+     +  + +  
Sbjct: 395 MDLKGIEGKIDYIYPELDPVTRSLRVRIVLANNEVALRPNTLAKIEIYGGPNEDVLVIPQ 454

Query: 395 EA-VQTVEDKPTVFLRVPGGFVPQHVQTGRSDGQRIEITSGLKPGAAYAASGSFVVKSQ 452
           EA +QT ++   +  +  G F+ + V  G     + EI SG++ G     SG F++ S+
Sbjct: 455 EALIQTGKENRVIVKQGDGSFLARKVTVGMMSQGKAEILSGIEEGEQVVTSGQFLLDSE 513