Pairwise Alignments

Query, 359 a.a., Small-conductance mechanosensitive channel from Variovorax sp. SCN45

Subject, 275 a.a., hypothetical Small-conductance mechanosensitive channel (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 48.9 bits (115), Expect = 2e-10
 Identities = 31/120 (25%), Positives = 59/120 (49%), Gaps = 1/120 (0%)

Query: 161 ASLLASAGVIGIVAGLAAKPVFSNLIAGLQIALAQPIRIDDVLVVEGEWGRVEEITGTFV 220
           ASL+A  G  G+  GLA +   SN  +G+ + L +P R+ D +   G  G V+EIT    
Sbjct: 85  ASLVAVIGAAGLAVGLALQGSLSNFASGVLMVLFRPCRVGDYIEAAGIAGTVDEITIFST 144

Query: 221 VIKIWDERRLILPLTYFIEKPFQNWTRHSSQLLGAVFIYADYGMPLAPLREEVERIVKSS 280
            ++  D + ++ P +  +     N++   ++ +  V I   Y   LA  ++ +  I+ ++
Sbjct: 145 KLRTPDNKVIVAPNSSIMNGTITNYSASENRRIDLV-ICVSYSADLAQTKKVLTEILDNN 203