Pairwise Alignments

Query, 443 a.a., CDP-4-dehydro-6-deoxy-D-glucose 3-dehydratase (EC 4.2.1.-) from Variovorax sp. SCN45

Subject, 395 a.a., polysaccharide biosynthesis protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  153 bits (386), Expect = 1e-41
 Identities = 103/284 (36%), Positives = 140/284 (49%), Gaps = 37/284 (13%)

Query: 60  DAWLTTGRFNTLFESRLAAYLGVKHLMTVNSGSSANLVAFSALTSPKLGDRAIRPGDEVI 119
           D W T        E  L   + VKH   ++SG++A   A  A          I  GDEVI
Sbjct: 35  DRWKTRD-----MEQLLCEKMNVKHAHLLSSGTAALQTAMMAA--------GIGAGDEVI 81

Query: 120 GVAAGFPTTVNPILQCGAVPVFVDVHIPTYNIDADQLEAAIGPRTKAIMLAHTLGNPYNL 179
                F  +V  I   GAVP+F ++   T  +  + +EA I PRTKAI L H  G+   +
Sbjct: 82  VPPFTFVASVEAIFMAGAVPIFAEID-ETLCLSPEGIEAVITPRTKAINLVHMCGSMAKM 140

Query: 180 KVVKAACEKHGLWLVEDCCDALGARYEGQMVGTFGDIGTLSFYPAHHITMGEGGAVFTNN 239
             +KA C+KH L L+ED C A+G  Y+GQ +GT GD+G  SF     IT GEGGAV TNN
Sbjct: 141 DEIKAICKKHNLVLLEDACQAIGGSYKGQALGTIGDVGCYSFDSVKTITCGEGGAVITNN 200

Query: 240 DELRLIAESIRDWGRDCYCPPGKDNTCGKRFCWKLGDLPEGYDHKYTYSHLGYNLKITDM 299
            E+   A    D G D     GKD                      ++  +G N +I++M
Sbjct: 201 TEIYDNAHMFSDHGHDHI---GKDRGA------------------ESHPIMGLNFRISEM 239

Query: 300 QAACALAQLDRLDGFVAARKKNFAYLKDRLSSCEE--FLELPEP 341
            AA  LAQL +LD  +  ++KN   +KD ++S  E  F E+P+P
Sbjct: 240 NAALGLAQLRKLDTIIDIQRKNKKAIKDAMASIPEVSFREIPDP 283