Pairwise Alignments

Query, 267 a.a., O-antigen export system permease protein RfbD from Variovorax sp. SCN45

Subject, 264 a.a., ABC transporter permease from Vibrio cholerae E7946 ATCC 55056

 Score =  105 bits (261), Expect = 1e-27
 Identities = 58/233 (24%), Positives = 120/233 (51%), Gaps = 3/233 (1%)

Query: 37  RYRRSMLGPLWLTLSMGVMIGGMGPLYASLFGTHLDKFFPHLALGVIFWGLFSTVVSDAC 96
           RY RS  G  WL+++M V I  +G +++ ++   +D + P++ +G I +  ++  ++++ 
Sbjct: 33  RYSRSKFGQTWLSITMFVQILCIGLIWSLIWRMGVDDYLPYVGVGHIIYLFYTQTINEST 92

Query: 97  NAFVGSSNYLKQGYFPISLFVWRGLARNLIQFAHQIVLYIPVALW-AGVSLSWSALLIIP 155
             FV  +        P  L V   + RN++   H I     + +W +  +  +S + +I 
Sbjct: 93  GIFVADARVYLNDRQPFMLSVGAHIYRNVLILLHNIPTIFLLVIWSSSANFEFSFMFVIS 152

Query: 156 AFLILIVNAHALGLLLGLVCTRYRDVTQIVTSIMQMLMFLTPVFWLPENLPGR-AKYVLW 214
             L L     A      ++ TR+RD+ Q++  +MQ+  F++PV W    LP +   YV  
Sbjct: 153 LSLSLFFVLFA-SYFCAVISTRFRDLIQLIGLLMQLAFFVSPVMWKVSFLPEQYQNYVYI 211

Query: 215 NPFAQMLDLLRTPLMGGVAHIHSWIGIGVWTVLCLTLASVLFVKYRRRVVYWL 267
           NPFA +L+L+R P++G   +  +++ +  WT +   ++   +    ++V++W+
Sbjct: 212 NPFASLLELIRNPIIGIDVNPLAFVSLVAWTFIIGMVSYFSYKVLDKKVIFWV 264