Pairwise Alignments

Query, 295 a.a., Transcriptional regulator, LysR family from Variovorax sp. SCN45

Subject, 325 a.a., transcriptional regulator, LysR family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  110 bits (275), Expect = 4e-29
 Identities = 80/283 (28%), Positives = 143/283 (50%), Gaps = 5/283 (1%)

Query: 3   NRLEALRVFCAAADAANFRDAAVRLSVSPQVVTRAVRELEDELGEPLFHRSTRGVQLTDF 62
           N ++ + VF   A+  +   AA +L++S   V++ V +LE ++G  LFHR+TR + LT+ 
Sbjct: 4   NMVKGMIVFATIAEKGSMSAAAQQLNLSSSAVSQQVAKLEMDMGISLFHRNTRHLTLTEA 63

Query: 63  GRQLAERARVAVGGVDELFHRTDRRALSQHEGTVRVTAPGIFGRRLIPQALAPMLAAHPG 122
           G    E     +  V+   H+ +        G +++ AP  FG  L+ Q LA +LAAHP 
Sbjct: 64  GHLFYENCIKIIKIVESGEHKLNALK-GTPSGELKIAAPVGFGSGLLSQPLANLLAAHPQ 122

Query: 123 LLLDLRVSEEHADMVDQQIDIGVRVGPLRDARFVARPVGKMALHVVAAPSLIARTGLPKN 182
           + L+L++ +   D+V++ ID+ + +GPL D+  +ARP+    + + AAPS I +  + ++
Sbjct: 123 ISLNLQLQDGPIDIVNEGIDLAICIGPLSDSNLIARPLADWRMLLCAAPSYIPQHQILQH 182

Query: 183 IDALAGMPLTALIDRMSGRPWPMIFSKGRQ-LAVTSPAFVTDDFDAEGAAVLAGLGFAQL 241
              L        I     +P  +  S+ ++ + +++     ++        L GLGFA L
Sbjct: 183 PGELQAF---NRISHSYAKPEFLTHSQTQERVELSAQRISVNNMQTLIQLTLDGLGFAVL 239

Query: 242 IGSLAEPGLASGALVPVLEADAPEPWPIYVYRAQRAPVPARVR 284
                   LASG LV +L   +   + +Y   + R   PA+V+
Sbjct: 240 PEPEVHQYLASGQLVTLLPEWSLRTYSVYSVTSARDKQPAKVK 282