Pairwise Alignments

Query, 598 a.a., Long chain acyl-CoA dehydrogenase [fadN-fadA-fadE operon] (EC 1.3.8.8) from Variovorax sp. SCN45

Subject, 585 a.a., Acyl-CoA dehydrogenase (EC 1.3.8.7) (from data) from Shewanella oneidensis MR-1

 Score =  461 bits (1187), Expect = e-134
 Identities = 264/599 (44%), Positives = 358/599 (59%), Gaps = 17/599 (2%)

Query: 1   MPTYNPPVRDMQFVLHEVLNVTEELKALPAHAE-TDADTINAVIEEAGKFAAEVTFPLNI 59
           M  Y  P+ DM+F+L +V +       LP  AE  D DT NA++EEA K +A++  PLN 
Sbjct: 1   MNPYQAPLADMRFLLEQVFDAPNTWSQLPDIAEMVDMDTANAILEEAAKISAQLIHPLNR 60

Query: 60  SGDEEGCTLDKATHEVKTPKGFKDAYAKYVEGGWPALSCDPAFGGQGLPFVVNQCLFEML 119
           +GDE+G       + V TP+G+K  Y +Y +GGW  L  +P FGG G+P ++   + EM 
Sbjct: 61  AGDEQGVL--HQDNCVITPEGYKAVYDQYSQGGWVGLCGEPEFGGMGMPKMLGVLVDEMA 118

Query: 120 NSANQAWTMYPGLSHGAYEALAAHGTEEQKKTYLPKLTSGEWTGTMCLTEPHCGTDLGLL 179
            SA  A+T+Y  L+ GA   + AHG+E  K+ YLPKL SGEW G M +TEP  G+DL  +
Sbjct: 119 YSACNAFTLYGSLTAGAALCINAHGSEVLKQAYLPKLYSGEWAGAMDMTEPQAGSDLRNI 178

Query: 180 RTKAEPQADGTYRITGSKIFISAGEHDMTDNIIHLVLARLPDAPKGSKGISLFVVPKFKV 239
           RT+A PQ DG+Y I+GSKIFI+ G+HD+T+N+IHLVLA+LP+    SKGISLF+VPK  V
Sbjct: 179 RTRAVPQEDGSYAISGSKIFITGGDHDLTENVIHLVLAKLPE----SKGISLFLVPKITV 234

Query: 240 KADGSLGERNPIFCAGLEHKMGIHGNATAQIVIEGATGTLVGEPNKGLAAMFVMMNAARL 299
             DG LG  N +    +EHKMG+ G+AT  +  + A G L+GEPN+GL  MF MMN  RL
Sbjct: 235 NKDGCLGGTNGVSVGSIEHKMGLKGSATCVMNFDEAKGYLIGEPNRGLVCMFTMMNYERL 294

Query: 300 GVGNQSLGLTEVAYQNALAYAKDRIQMRSLSGVKAKDKEADPIIVHPDVRKMLLTAKAYA 359
            +G Q LG  + AYQ A  YAK+R Q  +  G      ++DPIIVH DVR+MLLT +A  
Sbjct: 295 AIGIQGLGSAQAAYQMATDYAKERSQGVAAGG-SPTGSDSDPIIVHGDVRRMLLTIRAMT 353

Query: 360 EGGRALQIFCTLLLDKEHNHPDEKVRKDSGELVALLTPIVKAFITDNGHISTNACMQVFG 419
           E GRAL +F    LD    +  + V+  +   V LLTP+ KAF+TD G  +T    QVFG
Sbjct: 354 EAGRALSVFTGKQLDLA-KYAQDDVKAKAARYVGLLTPVAKAFLTDRGLDATIMAQQVFG 412

Query: 420 GHGFIKEWGMEQFVRDNRINMIYEGTNTIQSLDLLGRKVLGNNGASLKKF-GKLVGKLVE 478
           GHG+I+E G+EQ VRD RI  IYEGTN IQ++D LGRKV G+N A+LK+F  +L  ++ E
Sbjct: 413 GHGYIRETGVEQLVRDTRIAQIYEGTNGIQAIDFLGRKVTGDNLATLKEFVAELKAQMRE 472

Query: 479 EEGVNEKMAEFINPIAGLGDQLTKFTTEIGFKGFQNPDEVGAAAVDYLRVAGHFVFGYLF 538
              V+      I  +    D L      +  +    P  + A AVD+L   G+ V+G+ +
Sbjct: 473 FTQVD---GVKIAAVCARLDALVNVAESVNEQKLTQPALINACAVDFLDAFGYSVYGFYW 529

Query: 539 ARMAQVALREIAAGNNDPFYVAKLQTARFYFAKLFPETATLMRTARAGSKVLMDTDAAL 597
             M    L ++ +  +  F   K   A+FYF KL P+    +   RAG    M   A L
Sbjct: 530 LAM----LDKVPSAEDQNFAEQKAYLAKFYFDKLLPKADYHLAQVRAGDVSTMAMPAEL 584