Pairwise Alignments

Query, 298 a.a., Glutamate/aspartate ABC transporter, substrate-binding protein GltI (TC 3.A.1.3.4) from Variovorax sp. SCN45

Subject, 343 a.a., ABC transporter for D-Alanine, periplasmic substrate-binding component (from data) from Pseudomonas fluorescens FW300-N2E2

 Score = 93.2 bits (230), Expect = 7e-24
 Identities = 62/237 (26%), Positives = 105/237 (44%), Gaps = 7/237 (2%)

Query: 1   MKKQLLALAVTAFVATGAFAQATDTLAKIKERGAVNLGVRDS-SGLAYTLGGGKYVGFHT 59
           +K  L  +   A +    FAQA  TL  ++++G V  GV D   G +     GK VG   
Sbjct: 4   LKSTLAVMTAAAVLGVSGFAQAGATLDAVQKKGFVQCGVSDGLPGFSVPDSTGKIVGIDA 63

Query: 60  EMAERIIDDLSKDVGKPLKIDYQVITSQNRVPLVQNGTIDFECGSTTNNTARQKDVDF-- 117
           +    +   +    G   K+ +  + ++ R   +Q+G ID    ++T  ++R   +    
Sbjct: 64  DFCRAVAAAV---FGDATKVKFSQLNAKERFTALQSGEIDMLSRNSTMTSSRDAGMGLKF 120

Query: 118 -AYTTYVEEVRILTKANSGINGIADLKGKVVATTTGTTSVQTLRKNKRAEGLDFKEVMGK 176
             + TY + +  L     G+    +L G  +    GTT+   +    RA GL +  +   
Sbjct: 121 PGFITYYDGIGFLANNKLGVKSAKELDGATICIQAGTTTELNVSDYFRANGLKYTPITFD 180

Query: 177 DHADSFLLLESGRADAFVMDGSILAANAAKSKNPKDFKMVGEVLSVEPIACMLPKGD 233
              +S   LESGR D    D S L A  +K  +PKD+ ++ E +S EP+  ++  GD
Sbjct: 181 TSDESAKSLESGRCDVLTSDKSQLFAQRSKLASPKDYVVLPETISKEPLGPVVRNGD 237