Pairwise Alignments

Query, 222 a.a., Glutamate/aspartate ABC transporter, permease protein GltK (TC 3.A.1.3.4) from Variovorax sp. SCN45

Subject, 596 a.a., amino acid ABC transporter, permease protein, His/Glu/Gln/Arg/opine family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  126 bits (317), Expect = 8e-34
 Identities = 68/204 (33%), Positives = 111/204 (54%), Gaps = 5/204 (2%)

Query: 19  LKGFYFSVILTVVATLGGIFFGTLLALMRLSGKKWLDFPAAAYVNGMRSVPLVMVILGFF 78
           L G  +S+++ V+A     F G ++ + R S  +    P   Y+  +R  PL++VI   +
Sbjct: 387 LGGLAYSLLMAVIAISVSFFIGLVVGIGRTSDNRICRIPCLLYIELIRGNPLIIVIFWIY 446

Query: 79  LLVPFVIGHPIGAETSAVITFICFEAAYFSEIMRAGIQSIPRGQVFAGQAVGMTYSQNMK 138
             +P +         SA I    F  AY +EI+RAGIQ+IP GQV A  + G+T+ Q M+
Sbjct: 447 FFIPVLFNTFFNVFWSATIALTLFTGAYLAEIVRAGIQNIPAGQVEAAYSTGLTFVQTMR 506

Query: 139 LVILPQAFRNMLPVLLTQTIILFQDTSLVYAIGAYDMLKGFETAGKN---FGRPEEAYLL 195
            +ILPQA + M+P ++ Q I +F+DTSL + +G  ++   F   G N      P E Y  
Sbjct: 507 RIILPQALKQMIPAIVGQFIAIFKDTSLAFVLGVLELT--FVAQGINNRLMVYPMEIYGT 564

Query: 196 AAVVYFVLCYALSWLVKRLHKKIA 219
            A +YF+ C+++S    RL ++++
Sbjct: 565 VAFLYFICCWSMSVYAARLERRLS 588



 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 54/211 (25%), Positives = 109/211 (51%), Gaps = 8/211 (3%)

Query: 18  VLKGFYFSVILTVVATLGGIFFGTLLALMRLSGKKWLDFPAAAYVNGMRSVPLVMVILGF 77
           +LKG   +V ++++++   +  GT+L + RLS    L   A A V   R+ PL++ +  +
Sbjct: 57  ILKGLGVTVRISLISSALALGLGTVLGIARLSLFAPLRLTATAVVEFFRNTPLLVQLFFW 116

Query: 78  FLLVPFVIGHPIGAET--------SAVITFICFEAAYFSEIMRAGIQSIPRGQVFAGQAV 129
           +   P ++   I             A I    + +A+ +E++RAG+QSIP+G + A  + 
Sbjct: 117 YFAFPAILPENIRELLFTGNFEFWCATIGLSVYTSAFMAEVIRAGLQSIPKGLLEAAYSS 176

Query: 130 GMTYSQNMKLVILPQAFRNMLPVLLTQTIILFQDTSLVYAIGAYDMLKGFETAGKNFGRP 189
           G+ Y Q ++ +ILP AFR ++P L ++ +   +++SL   +G  ++    +       + 
Sbjct: 177 GLNYVQVLRTIILPMAFRAIIPPLGSEFLNNMKNSSLAMVVGVAELTWQSQQVESLTFKG 236

Query: 190 EEAYLLAAVVYFVLCYALSWLVKRLHKKIAI 220
            EA   A V+Y  L   +S+++  ++ K+ +
Sbjct: 237 FEATSAATVLYLSLSLLISFILNGVNGKMRL 267