Pairwise Alignments

Query, 345 a.a., TRAP-type transport system, periplasmic component, predicted N-acetylneuraminate-binding protein from Variovorax sp. SCN45

Subject, 338 a.a., ABC transporter substrate-binding protein from Sinorhizobium meliloti 1021

 Score =  161 bits (407), Expect = 3e-44
 Identities = 93/281 (33%), Positives = 156/281 (55%), Gaps = 7/281 (2%)

Query: 53  WADMVKERTQGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTINWSPQVKQLNLF 112
           +A++VKE++ G+I +KL+PG +L  G   +  SAL+ GVI+M V +    +  VK+    
Sbjct: 52  FAELVKEKSGGKIEVKLFPGGTL--GGDVQTVSALQGGVIEMTVLNAGILASNVKEFGAV 109

Query: 113 SMPFLMPDYAAIDALTQGEVGKEMFKTLEKAGVVPLAWGENGFREITNSKKPIKSPADIK 172
            +PFL       D +  G  G  + + L   G+V +A+ E GFR +TN++ P+    DIK
Sbjct: 110 DLPFLFDSGEEADKVMDGPFGTSLMERLPATGLVGVAYWELGFRNLTNNRHPVTKLEDIK 169

Query: 173 GMKIRVVGSPIYSDMFTALGANPTQMSWADAQPALASGAVDGQENPLFLFTVLKMQTVGQ 232
           G+KIR + SPI  ++F ALGAN   + + +   AL +G VDGQENP       K   V Q
Sbjct: 170 GLKIRTIQSPIPVELFNALGANAVPLPYTELYTALETGTVDGQENPSANIINAKFYEV-Q 228

Query: 233 KFVTTWGYVADPLVFVVNKEIWASWTPADQAIVRQAAIDAGKEEIVLARKGLVETDKPVL 292
           K++T   +  +P + +V+K+ W      ++ +++QAA++A        RK   E D   L
Sbjct: 229 KYMTLTRHQYNPQIVLVSKKFWDGLNDEEKTVLQQAAVEARD----FQRKVSREQDAAAL 284

Query: 293 KDIAGMGVTVTSLTPAEREEFVKATRPVYDKWKSTVGTDLV 333
           ++I   G+ V+ L+  E ++   A +P+ +K+ + +G + V
Sbjct: 285 EEIRKTGMEVSELSAEETQKLRDAVKPMIEKFSADIGQETV 325