Pairwise Alignments

Query, 320 a.a., Transcriptional regulator, AraC family from Variovorax sp. SCN45

Subject, 332 a.a., transcription factor nitR from Pseudomonas fluorescens FW300-N2E2

 Score =  111 bits (278), Expect = 2e-29
 Identities = 85/319 (26%), Positives = 142/319 (44%), Gaps = 14/319 (4%)

Query: 5   LSTDAVSRDQRLAYWTDMICNV------YVQ-LECDAVQQSGTGNFEGSIRQHTLPSLDM 57
           +STD V R  RL  W + + +       Y++ LE   +      NF+G +    L  L  
Sbjct: 7   VSTDQVVRSDRLMKWKEFMSDHLGRTPDYIKRLESTFIDPLHDSNFQGRLEYGDLGQLRF 66

Query: 58  SVVTSGPQKVMRTPGHIAHSSDDYFLVSIQARGQGVVRQDGRDAVLSAGDFALYDSTRPY 117
             +T+   +  R       + D   ++ +Q  G     Q  + +VL+  +  L D  +P+
Sbjct: 67  CRMTASAHRYSRHLSKAVDALDTPRMLIMQVAGVSHFEQGRQSSVLAPDEMLLVDCGKPF 126

Query: 118 ELLFEESFEQIVLKLPGDRLRGELRDTEALTATTVSGREGAGHLLLGMIRTLREDIDTLQ 177
            +   +  E  +L   G    G++  T  +    ++GR G G +L+ +I         L 
Sbjct: 127 NVTSTQGCEHFILLFQG--ASGQVAQTGDMH---LNGRNGLGRMLMHLISDAYNQYPLLN 181

Query: 178 PASALAVAHGVQSILVAGLQTLPAARAPALSNLTAYHLARVKRLIDEQLADPMLSVGTLA 237
             SA  +   +  +L   L+     +     +   +   R+K  I+  LAD  L++  +A
Sbjct: 182 NHSAGLIGDSITGLLDNALKNKQEEKQLE-HDFRFFKQNRLKAYIERHLADRDLTIERIA 240

Query: 238 AQLGVSVSHIHRVFKSE-PLTPSQYIWERRLEACSRDLLEPRLAGRPVAEIAYGRGFNDA 296
                SV  +HR F+ E   + S+YIW+RRL  C+ DL     A R + EIAY  G+  +
Sbjct: 241 NAEQCSVRSLHRAFQDELGCSVSEYIWQRRLSRCAEDLRNREHAHRSLTEIAYAWGYGSS 300

Query: 297 AHFSRAFRERFGCSPRAWR 315
           +HFSR F+  FG SPR +R
Sbjct: 301 SHFSRHFKSTFGMSPRLFR 319