Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 190 a.a., RNA polymerase sigma factor RpoE from Vibrio cholerae E7946 ATCC 55056

 Score = 52.4 bits (124), Expect = 5e-12
 Identities = 47/176 (26%), Positives = 74/176 (42%), Gaps = 18/176 (10%)

Query: 10  LICAAQTGDPAAIAGLLAVCQADARRYARRHCQAS-DIDDAVQESLMVIVRKVRGLKAAA 68
           LI   Q GD  A   L+   Q        R+   S D+ D  QE+ +   R +   +  +
Sbjct: 10  LIERVQNGDKQAFNLLVLRYQNKVCNLISRYVSNSGDVADVAQEAFIKAYRAIPTFRGES 69

Query: 69  AFSSWLFTVIKRECLRLQRAMFRHDPLDDEVAERQLASRTDDALRLDLTH---------- 118
           AF +WL+ +          A  R  P  D  AE        DAL+ +L++          
Sbjct: 70  AFYTWLYRIAVNTAKNHIVAQSRRPPASDVDAEEAEFYEGGDALK-ELSNPENITLSKEL 128

Query: 119 ------ALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKSRLHRARMLVRE 168
                 A+++LP      + LR+ + L+  EIA+ +  P G V+SR+ RAR  V +
Sbjct: 129 KKTVFDAIDALPDDLKTAMTLRELDGLSYEEIAEVMDCPVGTVRSRIFRAREAVEK 184