Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 180 a.a., RNA polymerase ECF sigma factor from Sinorhizobium meliloti 1021

 Score = 54.7 bits (130), Expect = 9e-13
 Identities = 43/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 34  RRYARRHCQASDI-DDAVQESLMVIVRKVRGLKAAAAFSSWLFTVIKR---ECLRLQRAM 89
           RR+A   C + D+ DD VQ +    +      +    F +W+F +++    + +R Q+  
Sbjct: 20  RRFAISLCGSRDVADDLVQSACERALASAERFEPGTRFDAWIFRILRNLWIDQVRRQKTA 79

Query: 90  FRHDPLDD--EVAERQLASRTDDALRLD-LTHALESLPAHYLEVVLLRDFEELTIAEIAQ 146
              D + +  ++A       T+  L L  +  A+  LP    EVVLL   EEL+  E A 
Sbjct: 80  GVQDDITERHDIAGSSGERETEARLTLKTVAEAITELPDEQREVVLLVCVEELSYREAAD 139

Query: 147 RLGEPAGAVKSRLHRARMLVRE 168
            +G P G V SRL RAR  + E
Sbjct: 140 VMGIPIGTVMSRLMRARRSLAE 161