Pairwise Alignments

Query, 180 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

Subject, 191 a.a., RNA polymerase sigma factor RpoE from Klebsiella michiganensis M5al

 Score = 54.7 bits (130), Expect = 1e-12
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 15/169 (8%)

Query: 10  LICAAQTGDPAAIAGLLAVCQADARRYARRHCQASDIDDAVQESLMVIVRKVRGLKAAAA 69
           L+   Q GD  A   L+   Q        R+    DI D VQES +   R +   +  +A
Sbjct: 10  LVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPPGDIADVVQESFVKAWRALDSFRGDSA 69

Query: 70  FSSWLFTVIKRECLRLQRAMFRHDPLDDEVAE-----------RQLASRTD----DALRL 114
           F +WL+ +          A  R  P  D  A            +++++  +    + LR 
Sbjct: 70  FYTWLYRIAVNTAKNYLVAQGRRPPSSDVDANDAENFESGGALKEISNPENLMLSEELRQ 129

Query: 115 DLTHALESLPAHYLEVVLLRDFEELTIAEIAQRLGEPAGAVKSRLHRAR 163
            +   +ESLP      + LR+ + ++  EIA  +  P G V+SR+ RAR
Sbjct: 130 IVFRTIESLPEDLRMAITLRELDGMSYEEIAAIMDCPVGTVRSRIFRAR 178