Pairwise Alignments

Query, 241 a.a., Pseudouridine synthase from Variovorax sp. SCN45

Subject, 241 a.a., 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases from Pseudomonas stutzeri RCH2

 Score =  152 bits (385), Expect = 4e-42
 Identities = 93/239 (38%), Positives = 130/239 (54%), Gaps = 13/239 (5%)

Query: 14  IRLAKRVAAMAGVSRREAELLIENGAVRVDGVQQMLPQSRVLPQQQVEIAAGAKPEPILP 73
           +RLAKR+A   G SRREAEL IE G V VDG     P  +V PQQ++E+  GA    I P
Sbjct: 5   VRLAKRLAEQLGCSRREAELYIEGGWVTVDGELVEAPFLKVSPQQRIELRDGATAREIAP 64

Query: 74  VTLLLYKPAGM----PTDRAHSLLVAANHHEPERAGQRFLPAHAKGQQCMTPLETGASGL 129
           VTLLL+KPAG+      D    +LVA+ H   + +    L  H   Q  + PL+  ASGL
Sbjct: 65  VTLLLHKPAGLAIDVDADSVRRVLVASEHWSDDPSRIEPLQRHLLQQNILLPLDPEASGL 124

Query: 130 VAYTQEFRIERKLHEDAGILEHEVMVDVAGPVSPEVLARLERSPA-------RVSIGRQS 182
             ++Q+  + R L      LE E +V+V+G       A L +          +  +  QS
Sbjct: 125 TVFSQQREVIRLLTSTRDKLEQEYVVEVSGEAEENGFALLAKGIGHRGKILPKAKVSWQS 184

Query: 183 DEQTGLRFALKGARPGQIAHICDNVGLRILAMRRIRIGRVPLAGLQPGQWRYLAPHERF 241
           + +  LR  +K   PG++  +C+ +GLR+LA +RIRIGR+ +A L  G WR +  HERF
Sbjct: 185 ENR--LRLVIKEPAPGEVRLLCEAIGLRVLACKRIRIGRLSMAKLPVGHWRIVGEHERF 241