Pairwise Alignments

Query, 241 a.a., Pseudouridine synthase from Variovorax sp. SCN45

Subject, 340 a.a., 23S rRNA pseudouridine(2604) synthase RluF from Vibrio cholerae E7946 ATCC 55056

 Score = 73.9 bits (180), Expect = 4e-18
 Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 32/238 (13%)

Query: 15  RLAKRVAAMAGVSRREAELLIENGAVRVDGVQQMLPQSRVLPQQQVEIAAGAKPEPILPV 74
           RL K ++     SRREA+ LIE G V ++G+Q  +  S+V  Q +V I          P+
Sbjct: 20  RLNKFISETGYCSRREADKLIEQGRVTLNGLQPEVG-SKVTEQDEVCIDGKPLRSKERPI 78

Query: 75  TLLLYKPAGMPT----DRAHSLLVAANHHEPERAGQRFLPAHAKGQQCMTPLETGASGLV 130
            + L KP G+      D   +++    HH+      R  P        +  L+  + GL+
Sbjct: 79  YIALNKPTGITCTTERDVPGNIVDFIGHHK------RIFP--------IGRLDKPSDGLI 124

Query: 131 AYTQEFRIERKLHEDAGILEHEVMVDVAGPVSPEVLARLERS---------PARVSIGRQ 181
             T +  I  K+       E E +V V  P++PE + ++            P +V+    
Sbjct: 125 FLTNDGDIVNKILRAGNNHEKEYVVRVDKPITPEFIRQMSSGVNILDTVTLPCKVT---- 180

Query: 182 SDEQTGLRFALKGARPGQIAHICDNVGLRILAMRRIRIGRVPLAGLQPGQWRYLAPHE 239
            + Q   R  L      QI  +C+ +G  +  +RR+RI  + L G+  G+WRYL+  E
Sbjct: 181 QETQYSFRIVLTQGLNRQIRRMCEALGYEVFKLRRVRIMNITLDGIPNGKWRYLSEAE 238