Pairwise Alignments

Query, 241 a.a., Pseudouridine synthase from Variovorax sp. SCN45

Subject, 243 a.a., ribosomal large subunit pseudouridine synthase B from Synechococcus elongatus PCC 7942

 Score = 58.5 bits (140), Expect = 1e-13
 Identities = 61/239 (25%), Positives = 96/239 (40%), Gaps = 24/239 (10%)

Query: 15  RLAKRVAAMAGVSRREAELLIENGAVRVDGVQQMLPQSRVLPQQQVEIAAGAKPEPILPV 74
           RL K ++ +   SRR+AE  I+ G V ++G    + Q   L + ++ +          P 
Sbjct: 4   RLQKILSQLGVASRRQAEQWIQQGRVTINGRVAEIGQQADLKRDRIHLDGKRLRPKHRPE 63

Query: 75  T--LLLYKPAGMPTDRAHSLLVAANHHEPERAG---QRFLPAHAKGQQCMTPLETGASGL 129
              LLL+KP G          V +   +P+R         P    G   +  L+T +SGL
Sbjct: 64  ARYLLLHKPVG----------VVSTCRDPQRRRTVIDLVDPEFRPGLHPVGRLDTDSSGL 113

Query: 130 VAYTQEFRIERKLHEDAGILEHEVMVDVAGPVSPEVLAR---------LERSPARVSIGR 180
           +    +  +  ++      +E    V V G     VL            +  PA V I  
Sbjct: 114 LLLCNDGELTYQISHPRFHIEKTYRVWVEGHPPASVLEHWRSGVWLDDYQTLPAGVRILH 173

Query: 181 QSDEQTGLRFALKGARPGQIAHICDNVGLRILAMRRIRIGRVPLAGLQPGQWRYLAPHE 239
              E T L   L   R  QI  + + +G  +L + R+ IG + L  LQPG++R L   E
Sbjct: 174 DRAESTLLEVILHEGRNRQIRRVAEQLGHPVLRLTRVAIGPLRLGSLQPGEYRSLTAAE 232