Pairwise Alignments

Query, 276 a.a., Probable signal peptide protein from Variovorax sp. SCN45

Subject, 230 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score = 73.9 bits (180), Expect = 3e-18
 Identities = 67/232 (28%), Positives = 105/232 (45%), Gaps = 39/232 (16%)

Query: 1   MKHLIRIALPVLVLPTLAALPMLANAQLSGNVAFTTDYKFRGQDQDMLGKNDYAKTKAFK 60
           MK  +R  L +L    + ALP  A+A ++GN+  T++Y +RG  Q               
Sbjct: 1   MKQALR-TLSLLAGTLMVALP--ASASVTGNIGATSNYLWRGATQT-----------GDA 46

Query: 61  PAIQGGFDYAFGDSGFYVGNWNSSVNWLKGNSIESDIYGGYKFKAGV-FDMDVGALTYIY 119
           PA+QGG D+   DSG Y+G W S+V++    S E D YGGY    G  F  D+  L Y Y
Sbjct: 47  PAVQGGIDFEH-DSGLYLGTWASNVDFGDDTSYEIDFYGGYAGSIGEDFGYDISYLYYAY 105

Query: 120 PGNSSGNTTEVYGSAGYTDETIGS----FTLKYSHTVSKDYFGYAGNKAGSGLKGTNTGY 175
           P + S        S  + + T+      F++ YS  V+        + A +     +  Y
Sbjct: 106 PDSDS--------SIDFGEVTLALSWKWFSIGYSKVVNA-----GSDVASAPFDEKDLSY 152

Query: 176 LNLAYSKEVFPKVTLKAAVGYTNMSSDIRRLGY--KSYVDYNVG--ASYDFG 223
           +N   S  +   +++ A  GY+  S D+    +   +Y DY++      DFG
Sbjct: 153 INAGVSFPLSETLSISAHYGYS--SGDVVNAWFDTDNYADYSLSLDKETDFG 202