Pairwise Alignments

Query, 190 a.a., RNA polymerase sigma factor from Variovorax sp. SCN45

Subject, 184 a.a., ECF subfamily RNA polymerase sigma-24 factor (RefSeq) from Shewanella amazonensis SB2B

 Score = 63.5 bits (153), Expect = 2e-15
 Identities = 57/187 (30%), Positives = 90/187 (48%), Gaps = 29/187 (15%)

Query: 13  DAAL-MACARGDRQALQQLYQRESRYLMGVALRIVRQRQQAEDVLHDAFISIWQRAETFN 71
           DA+L    A+GD+ A + LYQR  + +  +ALR+  +   A+++L ++F+ +W +   F 
Sbjct: 18  DASLAQQAAQGDKSAFEALYQRHHKRIYALALRLGGEPSLADEILQESFVRLWHKLPQF- 76

Query: 72  PARGEGR--GWIYSVVRNAALNMVRS----GARQVD--VSEDAAEAIDDQAALAAYASAA 123
             RGE +   W YS+  N AL+ ++      AR V     +DA E          ++   
Sbjct: 77  --RGESQFGTWFYSLALNQALSTLKQHRSFWARMVPDWQIQDAPE----------HSQND 124

Query: 124 DPFELRADLGRLEGCLGGLEPARRDCILYAYVEGCSHGEIAERLQTPLGTVKAWIQRGMR 183
           D   L   + RL       E AR   +L+A VEG SH E+A  L    GT KA   R   
Sbjct: 125 DGLLLDRLIVRLP------ERARLVFVLFA-VEGFSHEEVASLLGISTGTSKAHYHRARE 177

Query: 184 ALRECMA 190
            ++E ++
Sbjct: 178 LMKEMLS 184