Pairwise Alignments

Query, 294 a.a., Diaminopimelate epimerase (EC 5.1.1.7) from Variovorax sp. SCN45

Subject, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis S2

 Score =  223 bits (569), Expect = 3e-63
 Identities = 114/291 (39%), Positives = 173/291 (59%), Gaps = 20/291 (6%)

Query: 3   IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGVDFQY 62
           ++FTKM G GND++ +D     +       +F++DRHFG+G+D ++ + PS     DF+ 
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDV--ADFKM 58

Query: 63  VIHNADGGEVEQCGNGARCFMRFVSEHKLTDKTEVRVQTLAGVIAPRMGADGR----VTV 118
            + N+DG E E CGN  RC  +FV + K+TDK+ + ++TLAG+    M  +      V V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTIENGKVVLVKV 118

Query: 119 DMGAPVFETERVPFDTAGLDPQPEGAWQKWHLALGTR--AGSAIVSVAVLSMGNPHAVQV 176
           DMG P+ + E +P               + H  +     A     +   +SMGNPHA+  
Sbjct: 119 DMGEPILKAEEIP------------VLSEKHPVIDEEITAKDYCYNFTCVSMGNPHAITY 166

Query: 177 VDNVDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRTHIKLRVFERGAGETLACGTGACA 236
           ++NVD  P+ + GP  E H +FP++ N  F++++D+  +K+RV+ERGAGETLACGTGACA
Sbjct: 167 IENVDEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACA 226

Query: 237 AVVAGIRLGLLERRVDVQTHGGVLTIEWQGEGQPVLMTGPATTVFEGDIEV 287
            + A +  G + R+  V+  GG LTIEW    + + MTGPATTVFEG+I++
Sbjct: 227 VLTASVLKGYVGRKATVKLLGGDLTIEWNEFDKHIYMTGPATTVFEGEIDI 277