Pairwise Alignments

Query, 294 a.a., Diaminopimelate epimerase (EC 5.1.1.7) from Variovorax sp. SCN45

Subject, 277 a.a., diaminopimelate epimerase from Methanococcus maripaludis JJ

 Score =  220 bits (561), Expect = 2e-62
 Identities = 115/289 (39%), Positives = 171/289 (59%), Gaps = 16/289 (5%)

Query: 3   IRFTKMQGAGNDFVVLDETRGTLGLSAAQYRFLADRHFGVGADQILTVRPSPAEGVDFQY 62
           ++FTKM G GND++ +D     +       +F++DRHFG+G+D ++ + PS     DF+ 
Sbjct: 1   MKFTKMHGLGNDYIYVDAISQKIENPNEISKFVSDRHFGIGSDGLVLILPSDV--ADFKM 58

Query: 63  VIHNADGGEVEQCGNGARCFMRFVSEHKLTDKTEVRVQTLAGVIAPRMGADGR----VTV 118
            + N+DG E E CGN  RC  +FV + K+TDK+ + ++TLAG+    M  +      V V
Sbjct: 59  RMFNSDGSEAEMCGNAIRCVGKFVYDKKMTDKSTITIETLAGIKVLEMTVENGKVVLVKV 118

Query: 119 DMGAPVFETERVPFDTAGLDPQPEGAWQKWHLALGTRAGSAIVSVAVLSMGNPHAVQVVD 178
           DMG P+ + E +P  +       E    K +    T           +SMGNPHA+  ++
Sbjct: 119 DMGEPILKAEEIPVLSEKHPVIDEEITAKDYSYYFT----------CVSMGNPHAITYIE 168

Query: 179 NVDTAPVAEQGPQIEHHPRFPQRVNAGFMQVVDRTHIKLRVFERGAGETLACGTGACAAV 238
           NV   P+ + GP  E H +FP++ N  F++++D+  +K+RV+ERGAGETLACGTGACA +
Sbjct: 169 NVSEFPLEKIGPLFEIHEKFPRKTNVEFVELIDKNTVKMRVWERGAGETLACGTGACAVL 228

Query: 239 VAGIRLGLLERRVDVQTHGGVLTIEWQGEGQPVLMTGPATTVFEGDIEV 287
           VA I  G + R+  V+  GG L IEW      + MTGPATTVFEG+I++
Sbjct: 229 VASILKGYVGRKSTVKLLGGDLIIEWNENDNHIYMTGPATTVFEGEIDI 277