Pairwise Alignments

Query, 404 a.a., 23S rRNA (cytosine(1962)-C(5))-methyltransferase (EC 2.1.1.191) from Variovorax sp. SCN45

Subject, 396 a.a., hypothetical SAM-dependent methyltransferase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  329 bits (844), Expect = 8e-95
 Identities = 184/400 (46%), Positives = 250/400 (62%), Gaps = 17/400 (4%)

Query: 4   LRLKPGKERSMQRRHPWVFESAI--ARGGADSGETVRVESHDGAFLAWAAFSPASKIRAR 61
           ++LKPG+E+S++RRHPWVF + I   +G  + G+TV V +HDG +L   A+S  S+I+ R
Sbjct: 5   IKLKPGREKSLERRHPWVFSNGIHNVKGKPEPGQTVDVVAHDGHWLGRGAWSGESQIQVR 64

Query: 62  AWSFVETQRIDAAFLASVCARAVAARG--LFDLQSDGVRVVHGEADGLPGLIVDRYGDTL 119
            W+F   + ID  F      RA A R   + +    G R++  E+DGLPG+ +D+Y + L
Sbjct: 65  VWTFDREEEIDREFFKRRILRAQAGRDDLIREQGLTGYRLIAAESDGLPGITIDKYANVL 124

Query: 120 VAQFLSAGVERWKDVLADALLKATGLAKLYERSDASGREREGLKPVTGWLRGDGPT-EIV 178
           V Q LS G + W+D + D L +      +YERSD   R++EGL    G L G  P   ++
Sbjct: 125 VCQLLSMGADVWRDTIVDVLAELYPDCAIYERSDVDSRKKEGLASTMGLLHGTLPEMPLI 184

Query: 179 IREHGWKLSLDIATGHKTGFYLDQRDSRQRFAELAQHRRFRRVLNCFCYTGGFTVAALAG 238
           I E+G K+++D+  GHKTGFYLDQRD+R   A  A+  + + VLNCFCYTG F      G
Sbjct: 185 IEENGIKIAVDVTKGHKTGFYLDQRDNR---AIAARFVKGKSVLNCFCYTGTF------G 235

Query: 239 LKAANALQGAQLVSVDSSLPALERARGHLALNGFEGQGIEAEFLDANVNTVLREFIDQGR 298
           L AA A   A + +VD S  AL+ AR ++ +NG     +   + +A+V  +LR++ D+G+
Sbjct: 236 LYAAKA-GAASIENVDVSSLALDTARLNMRVNGLSDDNVH--YNEADVFKLLRQYRDEGK 292

Query: 299 TFDAIVLDPPKFAPTAAHAERAARAYKDINRLALKLLEPGGVLLTFSCSGGISADLFHKI 358
           TFD IVLDPPKFA   +    A R YKDIN +AL+LL PGGVLLTFSCSG + ADLF KI
Sbjct: 293 TFDVIVLDPPKFADNKSQLNGACRGYKDINMIALQLLNPGGVLLTFSCSGLMPADLFQKI 352

Query: 359 VASAGIDAGVDGYIAERLGAAPDHPMTIEFPEGEYLKGLV 398
           VA A +DA  +    ERL  A DHP+   FPEG YLKGLV
Sbjct: 353 VADAALDAKREIQFIERLSQASDHPIGSAFPEGFYLKGLV 392