Pairwise Alignments

Query, 307 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Variovorax sp. SCN45

Subject, 274 a.a., rRNA small subunit methyltransferase H from Pseudomonas fluorescens FW300-N2E2

 Score =  223 bits (569), Expect = 3e-63
 Identities = 132/274 (48%), Positives = 181/274 (66%), Gaps = 17/274 (6%)

Query: 44  ILSRLAPEGRLIAFDKDAEAVA--EAARISDARFSIRHQGFRSLG-ELPD----ASIDGL 96
           ILS+L P GRL+ FDKD +A+A  +A    D RF I  + F  L  E+ +      + G+
Sbjct: 2   ILSKLGPGGRLLGFDKDPQAIATGQALAAEDGRFVIVQRSFAELASEVAERGLAGKVSGV 61

Query: 97  LMDLGVSSPQIDNPVRGFSFRFDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEE 156
           L+DLGVSSPQ+D+P RGFSF  DGPLDMRMD +RG S AE++ TA +++IA V ++YGEE
Sbjct: 62  LLDLGVSSPQLDDPERGFSFLNDGPLDMRMDPSRGISAAEFVNTAPVEEIARVFKEYGEE 121

Query: 157 RFAVQIAKAIVARRQERGPISTTTELAELVAGTVKTREQGQNPATRTFQAFRIFINAELE 216
           RF+ ++A+A+V RR  + P   T +LAE++       E+G+NPATR FQ  RI +N EL 
Sbjct: 122 RFSGRMARAVVERRDIK-PFERTGDLAEVLKVANPAWEKGKNPATRAFQGLRIHVNNELG 180

Query: 217 ELQQALEASLSVLKPGGRLAVISFHSLEDRIVKQFIAKHSKEVYDR-------RAPFAAP 269
           +L+  LEA+L  L+ GGRL VISFHSLEDRIVK F+ K +K   D        R     P
Sbjct: 181 DLEVGLEAALEALEIGGRLVVISFHSLEDRIVKLFMRKLTKGEADNLPRNLPVRFEAFVP 240

Query: 270 KVMKLNALERIKPSQAEVSGNPRSRSAILRVAER 303
           K+ K++   +   S+AE+  NPR+RSA++RVAE+
Sbjct: 241 KI-KIHGKAQF-ASEAELKANPRARSAVMRVAEK 272