Pairwise Alignments

Query, 307 a.a., 16S rRNA (cytosine(1402)-N(4))-methyltransferase (EC 2.1.1.199) from Variovorax sp. SCN45

Subject, 316 a.a., ribosomal RNA small subunit methyltransferase H from Vibrio cholerae E7946 ATCC 55056

 Score =  275 bits (702), Expect = 1e-78
 Identities = 152/318 (47%), Positives = 211/318 (66%), Gaps = 18/318 (5%)

Query: 1   VTTPWTHTTVLLNEAVEALLSGSTAATGTYVDATFGRGGHARAILSRLAPEGRLIAFDKD 60
           +T  + H +VLLNE++E L   +    G Y+D TFGRGGH+R IL++L PEGRL + D+D
Sbjct: 1   MTASFQHISVLLNESIEGL---AIKPDGIYIDGTFGRGGHSRTILAQLGPEGRLYSIDRD 57

Query: 61  AEAVAEAARISDARFSIRHQGFRSLGELPD-----ASIDGLLMDLGVSSPQIDNPVRGFS 115
            +A+AEA +I D RF+I H  F  + E          +DG+L DLGVSSPQ+D+  RGFS
Sbjct: 58  PQAIAEAQKIDDPRFTIVHGPFSGIAEYAQRYDLVGKVDGVLFDLGVSSPQLDDAERGFS 117

Query: 116 FRFDGPLDMRMDTTRGESVAEWLATAELQQIAEVIRDYGEERFAVQIAKAIVARRQE--R 173
           F  DGPLDMRMD T G  V+ WLA A+L  I  VIR++GE++ A +IAKAIV  R+    
Sbjct: 118 FMKDGPLDMRMDPTSGMPVSAWLAQADLDDITWVIREFGEDKHARRIAKAIVEYRENELN 177

Query: 174 GPISTTTELAELVAGTV-KTREQGQNPATRTFQAFRIFINAELEELQQALEASLSVLKPG 232
            P++ T++LA+L++    K+ ++ ++PATR FQAFRI+IN+ELEE+  AL  +  +L P 
Sbjct: 178 EPLTRTSQLAKLISDAAPKSFKEKKHPATRAFQAFRIYINSELEEIDTALRGASDILAPQ 237

Query: 233 GRLAVISFHSLEDRIVKQFIAKHSK-EVYDRRAPFAAPKVMKLNAL------ERIKPSQA 285
           GRL+VISFHSLEDR+VK+F+ K S+        P    ++  L +       + +KPS  
Sbjct: 238 GRLSVISFHSLEDRMVKRFMRKESQGPQVPHGIPLTQDQIRALGSAKMKTVGKALKPSDQ 297

Query: 286 EVSGNPRSRSAILRVAER 303
           EV  NPRSRS++LRVAE+
Sbjct: 298 EVELNPRSRSSVLRVAEK 315