Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

Subject, 444 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase from Vibrio cholerae E7946 ATCC 55056

 Score = 57.0 bits (136), Expect = 1e-12
 Identities = 77/306 (25%), Positives = 117/306 (38%), Gaps = 96/306 (31%)

Query: 79  IVSYPGLKAATGPIASAFYDNPSALLD-----------VLAVTGTNGKTSTAWWLAESLS 127
           +V+ PG+  AT  I          + D           V+A+TG+NGK++    + +   
Sbjct: 76  VVTNPGIALATPEIQQVLAAGIPVVGDIELFAWHVDTPVIAITGSNGKST----VTDLSG 131

Query: 128 TLRAAGGVRVMKPDGTMQRDAPSPCAVMGTLGVGVPPELTYTGLTTPDPVMMQRELRSLV 187
            L  A GV+                AV G +GV   P L    L +PD  +   EL S  
Sbjct: 132 VLANAAGVKA---------------AVGGNIGV---PALD---LISPDVELYVLELSSF- 169

Query: 188 ERGFGACAIEASSIGIAERRLDGAQIAVAVFTNFTQDHLDYHGSMDAYWQAKAELFRWPG 247
                   +E +S           ++  A F N ++DH+D +  M+ Y QAK  +F    
Sbjct: 170 -------QLETTS---------SLKLKAAAFLNLSEDHMDRYQGMEDYRQAKLRIF--DH 211

Query: 248 LRAAVINIDDT-----HGASLCANLIDAGIGALDVWTVSAGGKPARLVARDIGYDAQGLQ 302
              AV+N DDT     H A L   ++  G+                          Q  Q
Sbjct: 212 AETAVVNADDTQTFPDHAAHL--QVVTFGV-------------------------EQAAQ 244

Query: 303 FSVAEH---------GTAAVERLSTGLIGQYNVANLLGVLGTLRALGLTLAQAAAACANL 353
           FS+A+H           A +      L+G++NVAN+L VL  L + G+    A  A  + 
Sbjct: 245 FSLAQHQGREYLFARDEAVMACAELSLVGRHNVANVLTVLALLDSAGVNFRLALDALKSY 304

Query: 354 TSVPGR 359
           T +  R
Sbjct: 305 TGLTHR 310