Pairwise Alignments

Query, 518 a.a., UDP-N-acetylmuramoyl-dipeptide--2,6-diaminopimela te ligase (EC 6.3.2.13) from Variovorax sp. SCN45

Subject, 481 a.a., UDP-N-acetylmuramate--alanine ligase (NCBI) from Rhodospirillum rubrum S1H

 Score = 50.4 bits (119), Expect = 1e-10
 Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 15/189 (7%)

Query: 215 VAVFTNFTQDHLDYHGSMDAYWQA-KAELFRWPGLRAAVINIDDTHGASLCANLIDAGIG 273
           +++ TN   +HLD++G+ D   +A +A +   P    A + ID     ++   L D  I 
Sbjct: 178 ISLVTNIDPEHLDFYGTFDKVREAFRAFIHNLPFYGFACMCIDHPEVQAMIPQLQDRKI- 236

Query: 274 ALDVWTVSAGGKP-ARLVARDIGYDAQGLQFSV-----AEHGTAAVERLSTGLIGQYNVA 327
                 ++ G  P A +   ++    +G +F V     A  G+  +E +   + G++NV 
Sbjct: 237 ------ITYGLSPQADIRGANVTLGPRGARFDVILTDRAGGGSRTIEGIRLPMYGRHNVL 290

Query: 328 NLLGVLGTLRALGLTLAQAAAACANLTSVPGRMDRAGTGDGAPLAVVDYAHTPDALDKAL 387
           N LG +G    +G+  A       +   V  R  R G   G  + + DY H P  +   L
Sbjct: 291 NALGAIGIAAEMGIDDAVIRDGLYHFEGVKRRFTRTGDAGGVTV-IDDYGHHPVEIAAVL 349

Query: 388 IGLRPLAQQ 396
              R   ++
Sbjct: 350 KAARDATER 358