Pairwise Alignments

Query, 706 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9) from Variovorax sp. SCN45

Subject, 443 a.a., UDP-N-acetylmuramoylalanine--D-glutamate ligase (RefSeq) from Shewanella amazonensis SB2B

 Score =  210 bits (535), Expect = 1e-58
 Identities = 146/374 (39%), Positives = 199/374 (53%), Gaps = 49/374 (13%)

Query: 315 PSVLAITGTNGKTTVTSLTGQLVERGGKTVAVAGNIGPTLLDTLWAHIDADTLPDVWVLE 374
           P VLAITG+NGK+TVT+L G++     K VAV GNIG   L+ L    +      ++VLE
Sbjct: 113 PCVLAITGSNGKSTVTTLVGEMARADNKAVAVGGNIGVPALELLGKGAE------LFVLE 166

Query: 375 LSSFQLDGVQDFEPTAATVLNLTQDHLDWHGDMSAYAAAKARIFGARGLMILNRDDAGVM 434
           LSSFQL+        A T LN+++DH+D + D+ AY  AK R++    L + NRDDA  +
Sbjct: 167 LSSFQLETTHSLHCIAGTCLNISEDHMDRYTDLEAYRQAKLRLYPQSKLSVYNRDDAATI 226

Query: 435 AMLPAPVKVKLQRPQIRTHVTFGAAMPLRPGDYGIERVNGMAWLVRALEADETQKRKRGA 494
              P            R  V+FG  +P    D+G+  ++G              K   GA
Sbjct: 227 PDEP------------RNTVSFGLGVP-ELDDWGL--MDG--------------KIYHGA 257

Query: 495 VVEEEIFLQRLMPADALRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYHGEPHRVE 554
                     +M    + + G HN  N LAA+AL  AAG     M+   +E+ G  HR E
Sbjct: 258 --------SEIMNLLDVALIGSHNHANLLAAMALCEAAGISREAMVKVAKEFTGLAHRCE 309

Query: 555 PIAIVDEVEYFDDSKGTNVGATVAALAGLGEE-RRVVVILGGEGKGQDFEPLAAPVRQYA 613
            +A  + + + +DSK TNVGATVAAL GL E    +++I GG+GKG DFEPL   +   +
Sbjct: 310 LVASHNSIAWVNDSKATNVGATVAALNGLAEHLGDIILIAGGDGKGADFEPLRGALGAVS 369

Query: 614 RAVVLIGRDASIIEAALASTGVSLMHAGSMEEAVQAAAARANPGDAVLLSPACASFDMFR 673
             + L GRD   I  A+   G   +   +M EAV+ A A ANPGD VLLSPACAS DM+ 
Sbjct: 370 HLITL-GRDGDKI--AVLKEGA--IKVATMAEAVEKAKALANPGDIVLLSPACASLDMYT 424

Query: 674 DYEHRADVFREAVQ 687
           ++  R D FR  V+
Sbjct: 425 NFMARGDDFRANVE 438



 Score = 69.3 bits (168), Expect = 4e-16
 Identities = 40/104 (38%), Positives = 62/104 (59%), Gaps = 4/104 (3%)

Query: 10  LILGLGASGLAMARWCARHGAVVTVADTREAPASLATLKAEWPEVAFVGGPFTAALVEGT 69
           ++LGLGA+GL++ R+ AR G V  V D+R  P  +  L AE+P+V  V G F    +   
Sbjct: 12  VVLGLGATGLSVVRFLARKGIVPLVMDSRRQPPGMDVLSAEFPDVTLVTGGFDCRYL--V 69

Query: 70  PIRAVYRSPGLSPATIAPVADAARAMGLPVGGELDLFARALLDL 113
             +++  SPG++  T  P   AA  MG+ V G+++LFAR + D+
Sbjct: 70  QAQSIIISPGIAVDT--PEVRAAMDMGIEVIGDVELFAREIQDM 111