Pairwise Alignments

Query, 706 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9) from Variovorax sp. SCN45

Subject, 477 a.a., UDP-N-acetylmuramoylalanine-D-glutamate ligase (NCBI) from Rhodospirillum rubrum S1H

 Score =  148 bits (374), Expect = 5e-40
 Identities = 136/383 (35%), Positives = 173/383 (45%), Gaps = 48/383 (12%)

Query: 318 LAITGTNGKTTVTSLTGQLVERGGKTVAVAGNIGPTLLDTLWAHIDADTLP--DVWVLEL 375
           L ITGTNGK+T T+L G +++     V V GN+G   L         + LP    +VLEL
Sbjct: 121 LGITGTNGKSTTTALIGHILKAARHPVQVGGNLGTPALSF-------EPLPFHGTYVLEL 173

Query: 376 SSFQLDGVQDFEPTAATVLNLTQDHLDWHGDMSAYAAAKARIF--GAR-GLMILNRDDAG 432
           SS+QL+ V       A +LN+T DHL  HG M  Y AAK +IF  G R G+ ++  DD  
Sbjct: 174 SSYQLELVPSLCCDVAVLLNITPDHLARHGGMDGYIAAKRQIFRCGPRPGVAVVCIDDEP 233

Query: 433 VMAMLPAPVKVKLQRPQIRTHVTFGA-AMPLRPGDYGIERVNGMAWLVRALEADETQKRK 491
            +A+  A     L R   R  V     A+P      G+  V+G          D TQ R 
Sbjct: 234 SLAIHDA-----LCRENGRKVVAVSTRALPRG----GVGAVDGQL-------VDATQGRP 277

Query: 492 RGAVVEEEIFLQRLMPADALRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYHGEPH 551
           R       I            + G HN  NA AA A     G     ++  +  + G PH
Sbjct: 278 RAVADLTTI----------ATLPGAHNWQNAAAAYAACRQHGIDAKIIVEAMASFPGLPH 327

Query: 552 RVEPIAIVDEVEYFDDSKGTNVGATVAALAGLGEERRVVVILGGEGKGQDFEPLAAPVRQ 611
           R E +A +D V + +DSK TN  A   AL        V  I GG+ K      L  P   
Sbjct: 328 RQELVAEIDGVRFINDSKATNADAADKALRCYDT---VYWIAGGQPKEGGIVSLE-PHFH 383

Query: 612 YARAVVLIGRDASIIEAALASTGVSLMHAGSMEEAVQAAAARA----NPGDAVLLSPACA 667
             R   LIG+ A   E  L    V L   G++  AV  AA  A     PG  VLLSPACA
Sbjct: 384 RMRQAYLIGQAAPAFERTLKGK-VPLSQVGTLTRAVTEAAKAAWRDAIPGAVVLLSPACA 442

Query: 668 SFDMFRDYEHRADVFREAVQSWA 690
           S+D F  +EHR D+FRE V   A
Sbjct: 443 SWDQFSSFEHRGDIFRELVADLA 465



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 7/105 (6%)

Query: 11  ILGLGASGLAMARWCARHGAVVTVADTREAPASLATLKAEWPEVAFVGGPFTAALVEGTP 70
           I+GLG SG+A AR  A  G  V   D  ++P      +AE   +  +    T+       
Sbjct: 17  IMGLGKSGMATARALAGTGTRVHAWD--DSPILRDAARAESVPLCDLTDQ-TSRTSPWPA 73

Query: 71  IRAVYRSPGLSPATIA---PVADAARAMGLPVGGELDLFARALLD 112
           ++ V  SPG+ P T     PVA  A   G+P+  ++DL ARA  D
Sbjct: 74  LQGVVWSPGI-PHTFPQPHPVAVIAHERGVPLFCDIDLLARARQD 117