Pairwise Alignments

Query, 706 a.a., UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase (EC 6.3.2.9) from Variovorax sp. SCN45

Subject, 456 a.a., UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase (RefSeq) from Shewanella loihica PV-4

 Score = 64.7 bits (156), Expect = 9e-15
 Identities = 89/348 (25%), Positives = 140/348 (40%), Gaps = 53/348 (15%)

Query: 271 DAAEFVAKIAELSATNPASAAVEEE-----SPQLELAPPVEPEAPKG------YTPSVLA 319
           DA +F AK    +  + ASA + E      +PQL +A   +     G        P  +A
Sbjct: 49  DAHDFAAK----AVMDGASALLVERELPIAAPQLIVANSQKAMGQIGAHVKQCVAPKSVA 104

Query: 320 ITGTNGKTTVTSLTGQLVERGGKTVAVAGNIGPTLLDTLWAHIDADTLPDVWVLELSSFQ 379
           +TG+NGKT+V  +   ++    + +  AGN    +   L   +  +   +  V EL +  
Sbjct: 105 LTGSNGKTSVKEMVATILSTQHQVLYTAGNFNNEVGVPL-TLLRLEPQHEYGVFELGANH 163

Query: 380 LDGVQD----FEPTAATVLNLTQDHLDWHGDMSAYAAAKARIF---GARGLMILNRDDAG 432
           L  +       +P  A V N+   HL+  G +   A AK+ IF      G+ ++N DDA 
Sbjct: 164 LGEINYTSSLVQPDVAMVNNVASAHLEGFGSLEGVAKAKSEIFLHLAKDGVAVINADDAF 223

Query: 433 VMAMLPAPVKVKLQRPQIRTHVTFGAAMPLRPGDYGIERVNGMAWLVRALEADETQ-KRK 491
              M          R    +H     +    P D   +           L AD     R 
Sbjct: 224 ADVM----------RRAAASHTQLSFSSQGNPADVSADE----------LSADALGCYRF 263

Query: 492 RGAVVEEEIFLQRLMPADALRIRGRHNAMNALAALALASAAGCPLGPMLYGLREYHGEPH 551
           R A ++E    QR +   +L + GRH   NALAA ++  A G  L  ++ GL        
Sbjct: 264 RIAYLDE----QRTV---SLPLSGRHQVSNALAATSICLALGLSLDEIVQGLMRLQPVKG 316

Query: 552 RVEPIAIVDEVEYFDDSKGTNVGATVAALAGLGE-ERRVVVILGGEGK 598
           R++P  +       DD+   N  +  AA+  L E E    ++LG  G+
Sbjct: 317 RMQPTRL-GRFLLIDDTYNANPASVGAAIDWLQEIEGNRCLVLGDLGE 363