Pairwise Alignments

Query, 290 a.a., Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) from Variovorax sp. SCN45

Subject, 304 a.a., shikimate 5-dehydrogenase (RefSeq) from Shewanella loihica PV-4

 Score =  216 bits (551), Expect = 4e-61
 Identities = 130/285 (45%), Positives = 173/285 (60%), Gaps = 13/285 (4%)

Query: 2   DLYCVIGNPVEHSRSPRIHARFAELCGQQMDYGRRLVPIGAFAEGIAAFRAEAAERGDTA 61
           D Y V G+P+ HS+SP IH  FA+  G+ + Y   L P+  FAE + AF     E G   
Sbjct: 32  DRYAVFGHPIGHSKSPAIHQAFAKSTGESLQYEAILAPLDGFAESLRAF----FEHG--G 85

Query: 62  RGCNITVPFKFEAAALAQHTSERATLAQAVNTLRFEADGGIHADNTDGIGLVNDIVRNAG 121
           +G N+T+PFK +A AL     + A LA AVNTL   ADG I  DNTDG+GLV D+ R+ G
Sbjct: 86  KGANVTLPFKEQAYALCDCLGDEAKLAGAVNTLTRLADGRIKGDNTDGLGLVADLERHLG 145

Query: 122 VPLQGKALLLIGAGGAAAGVLGPLLDAGAARVVVANRTVDKAIELVRRHAAVALRHGASL 181
             L GK++LLIGAGGAA G + PLL+AG   + + NRT  KA +L     A A +    +
Sbjct: 146 -SLCGKSVLLIGAGGAARGAILPLLNAGIDSLTIHNRTHSKAEQL-----AEAFKAYGQV 199

Query: 182 EAWALDKVPGAFDVVVNATASSLAGDAVPVSADVLRPGGLAVDMMYGPAAAGFMAWAEAH 241
           +A  LD++  +FD+V+N+T++SL+G+   +   ++    +  DMMYG     F  WA   
Sbjct: 200 KASTLDELTHSFDIVINSTSASLSGELPSLPKAIIAAHSVCYDMMYGRELTAFNHWALDQ 259

Query: 242 GAVAR-DGLGMLVEQAAESFEIWRGVRPPSAQVLAELRSSLAAAA 285
           GA    DGLGMLV QAA+SF IWRGV P    VLA+LRS LA+ A
Sbjct: 260 GASQTIDGLGMLVGQAAKSFAIWRGVEPAVEPVLAKLRSELASQA 304